RetrogeneDB ID: | retro_itri_500 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393296.1:9178369..9178645(+) | ||
Located in intron of: | ENSSTOG00000005115 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | VMA21 | ||
Ensembl ID: | ENSSTOG00000011179 | ||
Aliases: | None | ||
Description: | VMA21 vacuolar H+-ATPase homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:22082] |
Percent Identity: | 52.63 % |
Parental protein coverage: | 94.06 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | AALNALQPPEFRSESSLASTLKTLLFFTALMITVPIGLYFTTKSYIFEGILGMSNRDSYFYAAIVAVVAV |
AA.NA..P....SE..LA.T.K..L.F..LM..VP.GLYF..K...F.....MS..DS.FYA.IVAVV.. | |
Retrocopy | AAANAAEP---KSEGVLAMTFKIFLLFAGLMVKVPVGLYFSCKLLLFQSLMLMSPEDSAFYATIVAVVGL |
Parental | HVVLALFVYVAWNEGSRQWREGKQD |
HVVLA.FV...W.EG..QWRE.K.. | |
Retrocopy | HVVLAIFVFIVWKEGLPQWRENKNE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000006296 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000003916 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000008426 | 1 retrocopy | |
Homo sapiens | ENSG00000160131 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000009034 | 1 retrocopy | |
Mus musculus | ENSMUSG00000073131 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000013711 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000015201 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000020820 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000049744 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000011179 | 1 retrocopy |
retro_itri_500 ,
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