>retro_lafr_141
ACCATGTTGCTGTGAGTCACCTGGAGGCTAGCGGCCAGGGCCTTAACTGTGGCTCCTGCACTGAAGTCTGGGGCACCCAT
TCAGGGGTTGCACTTACGTATTATGGATCATACTCCCCAGTTGGCTGTTCCCTCAGATACAGTCCCTGCTCCACAGGTAG
AGTCTGTGCTGCGATCTCTCTATATGGATGTGCAGCTACAACTCCTCTGGACCCTGGTCCTTAATGCCATGCTCCCTTAC
GCAGTCAACTACTATGGGAACCCACACTCCTGGACACATGCTTACGGCTGGGAGAGTGAAGCAGCCATGGAACATGCTCA
CCAGCAAGCAGCATCTCTGATTGGGGCCGACCCTTGTGAGATCATTTTCACCAGTGGTGCTACTGAATTCAACAACACAG
CAATTAAGGGGGTGGCTAGGTTCTGTAAGTCACAGAAAAAGCACTTAATCACCACCCAGACTGAACACAAATTTGTCTTG
GACTCCTGCCATCCACTAGAAGCTGAGGGCTTCTAGGTCACCTACCAGCCAGTGCAGAAGAGTGGGATCATTGACCTAAA
GGAACTAGAGGCTACCATCCAGCCAGATACCAGTCTGGTCTCGGTCGGGACTGTGAACAATGAAACCGGAGTGAAGCAAT
CCATTGTGGAAATAGGGTGAATTTCCAATTCCAGAAAGATATATTTCCACACCGATGCTGCCTAGGTCATTGGAAAAATC
CCACATGACATCAACATGAAAATTGATCTCATGAGCATCAGTGGTCACAAAATCTATGGTCCAAAAAGGGTTGGTGCCAT
CTACATTCACCACTGGCCTCGTGTGCATGTGGAGACCCTGCAGAGTGGAGGGATTAGGAGTGGGGTATGCGGTCTTGGAC
AGAGCCCACACCCTTGGTGGTGGGGCAGGGGCTGTGTGTGAAGTGACACAGCAAGAGATGGAGTATGACCACAAGCAGAT
CTCAAAGTTAGCAGACTAACTGACTCCGAAGATATTGAAGAGCCTTCCAGATGTGGTGATGAATGGGGACCCTGAGCATC
ATTACCCAGGCTGCATCAAGCTCAACTTTGCATACGTGGAAGGGGAGAGTCTGCTGATGGCACTCAAGGATGTCACCTTA
TTCTCAGAGGACACTTGGACCTCTGCTTCCCTGAAGCCCTCTTATGCCCTTAGAGCAACTGGCACTGATGAGCATTTAGC
TCATTCTTCCATCAGGTTTGGCTTTGGCTGCTTCACTGCAGAGGAAGAAGTGGACTACACATTGGAGACGTGCATCCAGC
CTGTGAAGCATCTTCAAGAAATGAGCCCTCTCTGGGAGATGGTGCAGGATGGTGTTGACCTCAAGAGCATCAAGTGGACT
CAACAC
ORF - retro_lafr_141 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
78.26 % |
Parental protein coverage: |
98.49 % |
Number of stop codons detected: |
5 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | TMLLRVVWRRVTAALTAAPRSKSGAPIRGLRLRVVDHAPQSAIPSDTVPAPEAEPVLRPLYMDVQATTPL |
| TMLL.V.WR....ALT.AP..KSGAPI.GL.LR..DH.PQ.A.PSDTVPAP..E.VLR.LYMDVQ....L |
Retrocopy | TMLL*VTWRLAARALTVAPALKSGAPIQGLHLRIMDHTPQLAVPSDTVPAPQVESVLRSLYMDVQLQL-L |
|
Parental | DPRVLDAMLPYLVNYYGNPHSRTHAYGWESEAAMEHARQQVASLIGADPREIIFTSGATESNNIAIKGVA |
| ...VL.AMLPY.VNYYGNPHS.THAYGWESEAAMEHA.QQ.ASLIGADP.EIIFTSGATE.NN.AIKGVA |
Retrocopy | WTLVLNAMLPYAVNYYGNPHSWTHAYGWESEAAMEHAHQQAASLIGADPCEIIFTSGATEFNNTAIKGVA |
|
Parental | RFYKSRKKHLITTQTEHKCVLDSCRSLEAEGFQVTYLPVQKSGIINLKELEAAIQPDTSLVSVMTVNNEI |
| RF.KS.KKHLITTQTEHK.VLDSC..LEAEGF.VTY.PVQKSGII.LKELEA.IQPDTSLVSV.TVNNE. |
Retrocopy | RFCKSQKKHLITTQTEHKFVLDSCHPLEAEGF*VTYQPVQKSGIIDLKELEATIQPDTSLVSVGTVNNET |
|
Parental | GVKQPIAEIGRICSSRKVYFHTDAAQAVGKIPLDVNDMKIDLMSISGHKIYGPKGVGAIYIRRRPRVRVE |
| GVKQ.I.EIG.I..SRK.YFHTDAA...GKIP.D.N.MKIDLMSISGHKIYGPK.VGAIYI...PRV.VE |
Retrocopy | GVKQSIVEIG*ISNSRKIYFHTDAA*VIGKIPHDIN-MKIDLMSISGHKIYGPKRVGAIYIHHWPRVHVE |
|
Parental | ALQSGGGQ-ERGMRSGTVPTPLVV-GLGAACEVAQQEMEYDHKRISKLAERLTQKIMKSLPDVVMNGDPE |
| .LQSGG...E.GMRS.T.PTPLVV.G.GA.CEV.QQEMEYDHK.ISKLA..LT.KI.KSLPDVVMNGDPE |
Retrocopy | TLQSGGIR<EWGMRSWTEPTPLVV<GAGAVCEVTQQEMEYDHKQISKLAD*LTPKILKSLPDVVMNGDPE |
|
Parental | HHYPGCINLSFAYVEGESLLMALKDVALSSGSACTSASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTEE |
| HHYPGCI.L.FAYVEGESLLMALKDV.L.S....TSASL.PSY.LRA.GTDE.LAHSSIRFG.G.FT.EE |
Retrocopy | HHYPGCIKLNFAYVEGESLLMALKDVTLFSEDTWTSASLKPSYALRATGTDEHLAHSSIRFGFGCFTAEE |
|
Parental | EVDYTVEKCIQHVKRLREMSPLWEMVQDGIDLKSIKWTQH |
| EVDYT.E.CIQ.VK.L.EMSPLWEMVQDG.DLKSIKWTQH |
Retrocopy | EVDYTLETCIQPVKHLQEMSPLWEMVQDGVDLKSIKWTQH |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Loxodonta africana was not studied using RNA-Seq expression data.
Loxodonta africana was not studied using ChIP-Seq data.
Loxodonta africana was not studied using EST data.
Loxodonta africana was not studied using FANTOM5 data.
retro_lafr_141 was not experimentally validated.
Retrocopy orthology:
Loxodonta africana does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
4 parental genes, and
4 retrocopies.