RetrogeneDB ID: | retro_tsyr_412 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_112620:886..1674(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NFS1 | ||
Ensembl ID: | ENSTSYG00000005561 | ||
Aliases: | None | ||
Description: | NFS1 nitrogen fixation 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:15910] |
Percent Identity: | 92.42 % |
Parental protein coverage: | 57.55 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MLLRAAWRRAALAVKAAPGPRPVVPSRGLRLRVVDHAPQSVVPSDRIVAPEAGSVLRPLYMDVQATTPLD |
.LLR.AWRRAALAVKAAPGPRP.VPS.GLRLRVVDHAPQSVVPSDRI.APEAG.VLRPLYMDVQA.TPLD | |
Retrocopy | ILLRTAWRRAALAVKAAPGPRPAVPSPGLRLRVVDHAPQSVVPSDRIGAPEAGLVLRPLYMDVQAMTPLD |
Parental | PRVLDAMLPYLVNYYGNPHSRTHAYGWESEAAMEHARQQVASLIGADPREVIFTSGATESNNIAIKGVAR |
PRVLDAMLP.LVNYYGNP.SRTHA..WESEAAMEHAR.QVASLIGADPREV.FTSGATESNNIAIKGVA. | |
Retrocopy | PRVLDAMLPHLVNYYGNPLSRTHAHSWESEAAMEHARHQVASLIGADPREVLFTSGATESNNIAIKGVAK |
Parental | FYRSRKKHLITTQTEHKCVLDSCRSLEAEGFQVTYLPVQKSGIIDLKELEAAIQEDTSLVSVMTVNNEIG |
FYRSRKK.LITTQTEHKCVLD.CRSLEAE.FQVTYLPVQKSGIIDLK.LEAAIQEDTSLVSVMTVNNEIG | |
Retrocopy | FYRSRKKRLITTQTEHKCVLDTCRSLEAEVFQVTYLPVQKSGIIDLKKLEAAIQEDTSLVSVMTVNNEIG |
Parental | VKQPIAEIGRICSSRKVYFHTDAAQAVGKIPLDVNDMKIDLMSISGHK-IYGPK |
VKQPIAEIGRICSSRKVYFHTDAA.AVGKIPLDVNDMKIDLMSISGHK.IYGPK | |
Retrocopy | VKQPIAEIGRICSSRKVYFHTDAA*AVGKIPLDVNDMKIDLMSISGHK<IYGPK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Loxodonta africana | ENSLAFG00000010393 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000017050 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000002756 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000005561 | 1 retrocopy |
retro_tsyr_412 ,
|
Xenopus tropicalis | ENSXETG00000007430 | 1 retrocopy |