RetrogeneDB ID: | retro_lafr_337 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_126:2192133..2192624(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSLAFG00000028788 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SSR4 | ||
Ensembl ID: | ENSLAFG00000006908 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.33 % |
Parental protein coverage: | 94.8 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | LALLLLSGLSCCSAEACMEPQITPSYYTTSDAVISTETVFIVEISLTCKNRVQNMALYADVSGKQFPVTR |
L.LLLL.G...CSAE....P.I..SYYTTSDAVI.TETVFIVE.SLT.KN..QN..LYADV.GKQFPVT. | |
Retrocopy | LVLLLLAGSMGCSAETRETPVIVRSYYTTSDAVITTETVFIVEFSLTWKNGRQNIPLYADVGGKQFPVTW |
Parental | GQDVGRYQVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNEDISVI-PPLFTVSVDHRGTWNGPWVS |
GQD..RYQVSWS..H..AH.GTYEVRFFDEESYSLLRKAQRN.ED.S.I.PPLFTV...H.G.WNGPWVS | |
Retrocopy | GQDMERYQVSWSVEHRHAHSGTYEVRFFDEESYSLLRKAQRNSEDVSAI<PPLFTVDIKHLGAWNGPWVS |
Parental | TEVLAAVVGLVIYYLAFSAKSHIQA |
TEVLAA..G.V.YYLAF..KS.IQA | |
Retrocopy | TEVLAALMGTVMYYLAFNTKSSIQA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000011328 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000011167 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000025714 | 2 retrocopies | |
Homo sapiens | ENSG00000180879 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000024329 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000006908 | 1 retrocopy |
retro_lafr_337 ,
|
Mustela putorius furo | ENSMPUG00000008803 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000013602 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000006738 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000009037 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000012784 | 1 retrocopy |