RetrogeneDB ID: | retro_mdom_159 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 1:387190807..387191452(-) | ||
Located in intron of: | ENSMODG00000002830 | ||
Retrocopyinformation | Ensembl ID: | ENSMODG00000002836 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMODG00000015178 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 91.16 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MQQQRSQPELVEGNLPVFVFPTELIFYADDQSTHKQVLTLYNPYEFALKFKVLCTTPNKYVVVDAAGAVK |
MQQ...QPEL.EGNLPVFVFPTELIFYADDQSTHKQVLTLYNPYEFALKFKVLCTTP.KYVVVDAAGAVK | |
Retrocopy | MQQPPRQPELGEGNLPVFVFPTELIFYADDQSTHKQVLTLYNPYEFALKFKVLCTTPIKYVVVDAAGAVK |
Parental | PLCCVDIVIRHRDVRSCHYDVIDKFRLQVSEQSQRKALGRKEIIATLLPSAKEQRKEVEEKRIKEHLTES |
P.CCVDIVIRHRDVR.CHYDVIDKFRLQVSEQSQ.K.LGRKEIIATLLPSAKEQRKE.EEKR.KEHL.ES | |
Retrocopy | PQCCVDIVIRHRDVRPCHYDVIDKFRLQVSEQSQGKPLGRKEIIATLLPSAKEQRKEEEEKRLKEHLAES |
Parental | VFLKEHMLYQTENRNVSSGPSLLTVFLGIVCIAALMLPTLGEVESLVPLYFHLSVNQKLVAAYVLGLITM |
VF..E.ML.QTENR..SSGPSLLTVFLGIVCIAALMLPTLGEVESLVP.YFHLSVNQKLVAAYVLGLITM | |
Retrocopy | VFF-EQMLCQTENRTGSSGPSLLTVFLGIVCIAALMLPTLGEVESLVPHYFHLSVNQKLVAAYVLGLITM |
Parental | VILRI |
VILRI | |
Retrocopy | VILRI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 15 .73 RPM | 0 .00 RPM |
SRP007412_cerebellum | 26 .44 RPM | 0 .00 RPM |
SRP007412_heart | 7 .77 RPM | 0 .00 RPM |
SRP007412_kidney | 7 .90 RPM | 0 .00 RPM |
SRP007412_liver | 13 .59 RPM | 0 .00 RPM |
SRP007412_testis | 16 .11 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001304 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000007386 | 5 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000013117 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000022505 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000015178 | 1 retrocopy |
retro_mdom_159 ,
|
Mus musculus | ENSMUSG00000023074 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000005739 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000011544 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000012686 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000008152 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000006102 | 1 retrocopy |