RetrogeneDB ID: | retro_mdom_595 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 1:445019010..445019535(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMODG00000013200 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CHMP5 | ||
Ensembl ID: | ENSMODG00000004012 | ||
Aliases: | None | ||
Description: | charged multivesicular body protein 5 [Source:HGNC Symbol;Acc:26942] |
Percent Identity: | 92. % |
Parental protein coverage: | 79.91 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | YKDQIKKMREGPAKNMVKQKALRVLKQKRMYEQQRDNLSQQSFNMEQANYTIQSLKDTKTTVDAMKLGVK |
YKDQIKK.REGP.KNMVKQKALR..KQKR.YEQQ.DNLSQQSFNMEQ.NYTIQSLKDT.TTVDAMKLGVK | |
Retrocopy | YKDQIKKVREGPTKNMVKQKALRGVKQKRIYEQQWDNLSQQSFNMEQENYTIQSLKDTRTTVDAMKLGVK |
Parental | EMKKAYKQVKIDQIEDIQDQLEDMMEDANEIQEALSRSYGTPEIDEDDLEAELDALGDELLADEDSSYLD |
EMKKAYKQVKIDQIE.IQDQLEDMMEDANEIQEALS.SYGTPEIDEDDLEAELDALGDELLADEDSSYLD | |
Retrocopy | EMKKAYKQVKIDQIENIQDQLEDMMEDANEIQEALSQSYGTPEIDEDDLEAELDALGDELLADEDSSYLD |
Parental | EAASAPAIPEGVPSDAKNKDGVLVDEFGLPQIPAT |
..ASAPAIPEGVP.DAKNKDGVLVDEFGLPQI.AT | |
Retrocopy | KVASAPAIPEGVPNDAKNKDGVLVDEFGLPQILAT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .12 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |