Parental gene:

CHMP5, ENSG00000086065

Aliases:CHMP5, C9orf83, HSPC177, PNAS-2, SNF7DC2, Vps60
Description:charged multivesicular body protein 5 [Source:HGNC Symbol;Acc:26942]
Organism:Human (Homo sapiens)
Coordinates:9:33264939..33281977(+)


>ENSG00000086065
ATGAACCGACTCTTCGGGAAAGCGAAACCCAAGGCTCCGCCGCCCAGCCTGACTGACTGCATTGGCACGGTGGACAGTAG
AGCAGAATCCATTGACAAGAAGATTTCTCGATTGGATGCTGAGCTAGTGAAGTATAAGGATCAGATCAAGAAGATGAGAG
AGGGTCCTGCAAAGAATATGGTCAAGCAGAAAGCCTTGCGAGTTTTAAAGCAAAAGAGGATGTATGAGCAGCAGCGGGAC
AATCTTGCCCAACAGTCATTCAACATGGAACAAGCCAATTATACCATCCAGTCTTTGAAGGACACCAAGACCACGGTTGA
TGCTATGAAACTGGGAGTAAAGGAAATGAAGAAGGCATACAAGCAAGTGAAGATCGACCAGATTGAGGATTTACAAGACC
AGCTAGAGGATATGATGGAAGATGCAAATGAAATCCAAGAAGCACTGAGTCGCAGTTATGGCACCCCAGAACTGGATGAA
GATGATTTAGAAGCAGAGTTGGATGCACTAGGTGATGAGCTTCTGGCTGATGAAGACAGTTCTTATTTGGATGAGGCAGC
ATCTGCACCTGCAATTCCAGAAGGTGTTCCCACTGATACAAAAAACAAGGATGGAGTTCTGGTGGATGAATTTGGATTGC
CACAGATCCCTGCTTCATAG

Library Parental gene expression (RPM)
bodymap2_liver 23 .79 RPM
bodymap2_lung 111 .52 RPM
bodymap2_breast 66 .07 RPM
bodymap2_adipose 53 .49 RPM
bodymap2_adrenal 55 .70 RPM
bodymap2_skeletal_muscle 27 .57 RPM
bodymap2_thyroid 69 .15 RPM
bodymap2_prostate 83 .57 RPM
bodymap2_colon 92 .31 RPM
bodymap2_testis 84 .84 RPM
bodymap2_brain 89 .54 RPM
bodymap2_heart 37 .88 RPM
bodymap2_white_blood_cells 59 .20 RPM
bodymap2_lymph_node 68 .91 RPM
bodymap2_ovary 59 .55 RPM
bodymap2_kidney 83 .69 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000012672 ortholog_one2one 1 retrogene
retro_chof_2045,
Callithrix jacchus ENSCJAG00000008104 ortholog_one2one 2 retrogenes
retro_cjac_2868, retro_cjac_4159,
Cavia porcellus ENSCPOG00000003467 ortholog_one2one 2 retrogenes
retro_cpor_1221, retro_cpor_1306,
Dipodomys ordii ENSDORG00000006280 ortholog_one2one 2 retrogenes
retro_dord_292, retro_dord_764,
Echinops telfairi ENSETEG00000001424 ortholog_one2one 1 retrogene
retro_etel_2126,
Microcebus murinus ENSMICG00000012113 ortholog_one2one 2 retrogenes
retro_mmur_369, retro_mmur_843,
Myotis lucifugus ENSMLUG00000011045 ortholog_one2one 1 retrogene
retro_mluc_954,
Macaca mulatta ENSMMUG00000020149 ortholog_one2one 1 retrogene
retro_mmul_2573,
Monodelphis domestica ENSMODG00000004012 ortholog_one2one 2 retrogenes
retro_mdom_2002, retro_mdom_595,
Mus musculus ENSMUSG00000028419 ortholog_one2one 1 retrogene
retro_mmus_1469,
Nomascus leucogenys ENSNLEG00000005158 ortholog_one2one 2 retrogenes
retro_nleu_2197, retro_nleu_2420,
Otolemur garnettii ENSOGAG00000000774 ortholog_one2one 6 retrogenes
retro_ogar_2072, retro_ogar_2190, retro_ogar_2386, retro_ogar_2504, retro_ogar_2509, retro_ogar_916,
Pongo abelii ENSPPYG00000019137 ortholog_one2one 2 retrogenes
retro_pabe_239, retro_pabe_3750,
Pan troglodytes ENSPTRG00000020857 ortholog_one2one 2 retrogenes
retro_ptro_3210, retro_ptro_373,
Rattus norvegicus ENSRNOG00000008672 ortholog_one2many 1 retrogene
retro_rnor_2614,
Ictidomys tridecemlineatus ENSSTOG00000026573 ortholog_one2one 1 retrogene
retro_itri_424,
Tupaia belangeri ENSTBEG00000003486 ortholog_one2one 5 retrogenes
retro_tbel_1626, retro_tbel_1894, retro_tbel_2407, retro_tbel_3364, retro_tbel_3494,
Tursiops truncatus ENSTTRG00000010575 ortholog_one2one 1 retrogene
retro_ttru_338,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_494 83.81 95.43
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2. retro_hsap_4822 90.41 100.00
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Download FASTA sequences of all ENSG00000086065 retrocopies