RetrogeneDB ID: | retro_mmus_1469 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 16:55074413..55074880(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Chmp5 | ||
Ensembl ID: | ENSMUSG00000028419 | ||
Aliases: | Chmp5, 2210412K09Rik, AW545668 | ||
Description: | charged multivesicular body protein 5 [Source:MGI Symbol;Acc:MGI:1924209] |
Percent Identity: | 80.89 % |
Parental protein coverage: | 70.78 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | PKAPPPSLTDCI-GTVDSR-AESIDKKISRLDAELVKYKDQIKKMREGPAKNMVKQKALRVLKQKRMYEQ |
PKA.PPSLTDCI.GTV.SR.A.SIDKKIS.LD.EL.KYK..IK.MREGP.KNMVKQKALRVLKQK.MYE. | |
Retrocopy | PKALPPSLTDCI>GTVNSR>AVSIDKKISQLDVELAKYKY*IKNMREGPSKNMVKQKALRVLKQKQMYEK |
Parental | QRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAYKEVKIDQIEDLQDQLEDMMEDANEIQE |
Q.DNLA.QSF.MEQANYTIQSLKDTKT.VDAMKLGVKE.KKAYKEVKIDQIEDLQDQLED..E..NEIQE | |
Retrocopy | Q*DNLASQSFDMEQANYTIQSLKDTKTMVDAMKLGVKEVKKAYKEVKIDQIEDLQDQLEDRKEETNEIQE |
Parental | ALGRSYGTPELDEDDLE |
AL..S..T.ELDE..LE | |
Retrocopy | ALSLSFDTSELDENNLE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 50 .39 RPM |
SRP007412_cerebellum | 0 .00 RPM | 62 .74 RPM |
SRP007412_heart | 0 .00 RPM | 29 .29 RPM |
SRP007412_kidney | 0 .00 RPM | 75 .59 RPM |
SRP007412_liver | 0 .00 RPM | 46 .18 RPM |
SRP007412_testis | 0 .00 RPM | 39 .79 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012672 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000008104 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000003467 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000006280 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000001424 | 1 retrocopy | |
Homo sapiens | ENSG00000086065 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000012113 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000011045 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000020149 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000004012 | 2 retrocopies | |
Mus musculus | ENSMUSG00000028419 | 1 retrocopy |
retro_mmus_1469 ,
|
Nomascus leucogenys | ENSNLEG00000005158 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000000774 | 6 retrocopies | |
Pongo abelii | ENSPPYG00000019137 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000020857 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000008672 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000026573 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000003486 | 5 retrocopies | |
Tursiops truncatus | ENSTTRG00000010575 | 1 retrocopy |