RetrogeneDB ID: | retro_mdom_688 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 2:102482179..102482692(+) | ||
Located in intron of: | ENSMODG00000009507 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ASF1B | ||
Ensembl ID: | ENSMODG00000012099 | ||
Aliases: | None | ||
Description: | anti-silencing function 1B histone chaperone [Source:HGNC Symbol;Acc:20996] |
Percent Identity: | 84.48 % |
Parental protein coverage: | 85.15 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | SEALADDLEWKIIYVGSAESEEFDQILDSVLVGPVPAGRHMFVFQADAPNASLIPETDAVGVTVVLITCT |
SEAL.D.LEWKIIYVGSAE.EEFDQILDSVLVG.VPAGRHMFVFQAD.PN.SL.PETD.VGVTVVLIT.T | |
Retrocopy | SEALVDALEWKIIYVGSAENEEFDQILDSVLVGLVPAGRHMFVFQADVPNTSLNPETDSVGVTVVLITGT |
Parental | YHGQEFIRVGYYVNNEYTNPE-LRENPPLKPDFSQLQRNILASNPRVTRFHINWDSTTDKLEDIENQDPV |
YHGQEFI.VGYYVNNEYTNP..L.ENP.LKPDFS....N...SNP.VTRFHINWDSTTDKLEDIENQDPV | |
Retrocopy | YHGQEFIPVGYYVNNEYTNPD<LQENPTLKPDFSEPH*N-MTSNPWVTRFHINWDSTTDKLEDIENQDPV |
Parental | LSLGLPLSCPPTK-GLDLPDCAPSIIPENSMDCI |
LSLGLPL.CPPT..GLD.PDCAPSIIPENSM.CI | |
Retrocopy | LSLGLPLNCPPTI>GLDFPDCAPSIIPENSMGCI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000004085 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000016482 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000013713 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000000537 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000012099 | 4 retrocopies | |
Sorex araneus | ENSSARG00000000534 | 1 retrocopy |