RetrogeneDB ID: retro_mluc_2042

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430000:412352..412651(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ASF1B
• Ensembl ID: ENSMLUG00000000537
• Aliases: None
• Description: None

Sequence

>retro_mluc_2042
GCCAAGGTGTTGGTACTGAACCTGGCGGTGCTGGAGAACCCGAGCCCTTCCACAGCCCCCTTCCGGTTCCAGGTCAGCTT
TGAATGCAATGAGACTCTGGCGGACGGCCTGGAGTTGCACATCATTTATGTTGGCTCAGCTGAGAGTAGGAGTTTGATCC
AACCCTAGACTCGGTGCTGGTTGGCGGTGCAGGGAGACACGTGTTCATCTTTCAGGCTGATGTCCGCAACTCATCCCTCC
TCCGTGAGAGCGATGCCTTCGGTGTGCCCTTGGGCCTCATCACCTGCACCGACCATGGA

Alignment

ORF - retro_mluc_2042 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 70.87 %
• Parental protein coverage: 50.5 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  AKVSVLNVAVLENPSPFHSPFRFEISFECNEALADDLEWKIIYVGSAESE-EFDQILDSVLVGPIPAGRH
          AKV.VLN.AVLENPSP...PFRF..SFECNE.LAD.LE..IIYVGSAES..EFD..LDSVLVG...AGRH
Retrocopy AKVLVLNLAVLENPSPSTAPFRFQVSFECNETLADGLELHIIYVGSAESR<EFDPTLDSVLVG--GAGRH

Parental  MFVFQADAPNPSLIPESDAIGVTVVLITCTYHG
          .F.FQAD..N.SL..ESDA.GV...LITCT.HG
Retrocopy VFIFQADVRNSSLLRESDAFGVPLGLITCTDHG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2042 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000004085	1 retrocopy	retro_btau_662,
Canis familiaris	ENSCAFG00000016482	1 retrocopy	retro_cfam_33,
Echinops telfairi	ENSETEG00000013713	1 retrocopy	retro_etel_379,
Myotis lucifugus	ENSMLUG00000000537	4 retrocopies	retro_mluc_1426, retro_mluc_2042 , retro_mluc_2614, retro_mluc_775,
Myotis lucifugus	ENSMLUG00000013053	1 retrocopy	retro_mluc_1410,
Monodelphis domestica	ENSMODG00000012099	4 retrocopies	retro_mdom_366, retro_mdom_367, retro_mdom_369, retro_mdom_688,
Sorex araneus	ENSSARG00000000534	1 retrocopy	retro_sara_552,