RetrogeneDB ID: retro_meug_1822

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold62106:177..495(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MRPL17
• Ensembl ID: ENSMEUG00000013588
• Aliases: None
• Description: mitochondrial ribosomal protein L17 [Source:HGNC Symbol;Acc:14053]

Sequence

>retro_meug_1822
ATGCATGGCTATGCTGAGCGGCTCTTTGACTACAGGAAGCTGGGAGACACCAAGAAGGCGATGCAGATGACTGACTTCTG
GCTAATGGAAAAGGACCTAATCCCCAAACTGTTCCAGACATTGGACCCTCGCTTCAGCAATCATACTGGGAACTATACAA
GAATGTTTCAGATTCCAAACAGGGACAACCTGGACAGGGCCAAGATGGCAGTGATTGAATACAAGGGGAACATCCTCCCT
CCGTTGGTGCTTCCACATCAGGACAACAATCCCACTCTCAATCAGTTACTTGAGGGCCTTCTCCAGGACCTGGAACAG

Alignment

ORF - retro_meug_1822 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.41 %
• Parental protein coverage: 67.92 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MRGYAERLIDYGKLGDTNEKAMRMADFWLXEKDLIPKLFQTLAPRFSNQTGDYTRMFQIPNRENLDRAKM
          M.GYAERL.DY.KLGDT..KAM.M.DFWL.EKDLIPKLFQTL.PRFSN.TG.YTRMFQIPNR.NLDRAKM
Retrocopy MHGYAERLFDYRKLGDT-KKAMQMTDFWLMEKDLIPKLFQTLDPRFSNHTGNYTRMFQIPNRDNLDRAKM

Parental  AVIEYKGNPLPPLVLPRRDNNRTLLNQLLVGLRQDLEQ
          AVIEYKGN.LPPLVLP..DNN.T.LNQLL.GL.QDLEQ
Retrocopy AVIEYKGNILPPLVLPHQDNNPT-LNQLLEGLLQDLEQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1822 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1822 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000027536	1 retrocopy	retro_cpor_1430,
Macropus eugenii	ENSMEUG00000013588	1 retrocopy	retro_meug_1822 ,
Myotis lucifugus	ENSMLUG00000001144	2 retrocopies	retro_mluc_2368, retro_mluc_679,
Mustela putorius furo	ENSMPUG00000005449	1 retrocopy	retro_mputfur_125,
Rattus norvegicus	ENSRNOG00000019497	1 retrocopy	retro_rnor_1979,
Sus scrofa	ENSSSCG00000024693	1 retrocopy	retro_sscr_217,
Ictidomys tridecemlineatus	ENSSTOG00000003313	3 retrocopies	retro_itri_1019, retro_itri_1156, retro_itri_240,