RetrogeneDB ID: retro_mluc_679

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429771:12746533..12746835(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000023579
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: MRPL17
• Ensembl ID: ENSMLUG00000001144
• Aliases: None
• Description: None

Sequence

>retro_mluc_679
ATGCGGTTGTCGGTCGCCGCCGCCATCTCCCATGGCCGCGTGTTCCGCCGCCTGGGCCTCGGTCCCGAGTCCCGCAGCCA
CCTGTTGCGGAACTTGCTGACGGGACTAGTGTGACACGAACACATCGAGGCGTCCTGGGCGCACGTGGACGAGATGAAGG
GTTACGCCGAGAAGTTCATCGATTATGGGAAGCTGGGAGACACCAACGAAAGAGCCATGCACATGGCTGACTTCTGGCTC
ACAGAGAAGGACGTGATCCCAAAGCTGTTTAAGTGCTGGCCCCTCGGTATCTATCAAGGTCA

Alignment

ORF - retro_mluc_679 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.27 %
• Parental protein coverage: 58.72 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MRLSVAAAISHGRVYRRLGLGPESRIHLLRNLLTGLVRHERIEASWARVDEMRGYAEKLIDYGKLGDTNE
          MRLSVAAAISHGRV.RRLGLGPESR.HLLRNLLTGLV.HE.IEASWA.VDEM.GYAEK.IDYGKLGDTNE
Retrocopy MRLSVAAAISHGRVFRRLGLGPESRSHLLRNLLTGLV*HEHIEASWAHVDEMKGYAEKFIDYGKLGDTNE

Parental  RAMRMADFWLTEKDLIPKLFQ-VLAPRYQGQS
          RAM.MADFWLTEKD.IPKLF..VLAPRY...S
Retrocopy RAMHMADFWLTEKDVIPKLFK<VLAPRYLSRS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_679 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 7 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000027536	1 retrocopy	retro_cpor_1430,
Macropus eugenii	ENSMEUG00000013588	1 retrocopy	retro_meug_1822,
Myotis lucifugus	ENSMLUG00000001144	2 retrocopies	retro_mluc_2368, retro_mluc_679 ,
Mustela putorius furo	ENSMPUG00000005449	1 retrocopy	retro_mputfur_125,
Rattus norvegicus	ENSRNOG00000019497	1 retrocopy	retro_rnor_1979,
Sus scrofa	ENSSSCG00000024693	1 retrocopy	retro_sscr_217,
Ictidomys tridecemlineatus	ENSSTOG00000003313	3 retrocopies	retro_itri_1019, retro_itri_1156, retro_itri_240,