RetrogeneDB ID: retro_meug_1948

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold73963:7345..7935(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MTFR1L
• Ensembl ID: ENSMEUG00000016175
• Aliases: None
• Description: mitochondrial fission regulator 1-like [Source:HGNC Symbol;Acc:28836]

Sequence

>retro_meug_1948
CTGTTTGTCATGCAGCACAATGCCTCAGTGCCCAAACTTCGAGGGCCATAGGAGAGGTTCCTGGCCTTGAAGAAGCCTGG
CCTATCAGCCCTGAGCCGAACCACTGAACTACAAGATGAGCTAAGTCACCTATGCTGTCAGATTGCCAAAATTGTGGCAG
CAGATGCAACCTCGGCTTCATTAACGCCAGATCTCTTCTCTGGAGTTCAAAAGTCTCTTTTCCCTAACCTTGTTTTGGGA
TCCTCATTCCACTCTACAACTTCCTTTGTCATTAGTGACATCACAGAGGAGGCCAGTTAGAAGGCCCTGAGCTACCATCG
GTTCCCATGCTTTGTTCTGCCATCTCTGAATGTTGTAAAACTGACTCCAAAGCTTCCTGGAGCCTGGCTGAAGACAGCGA
CTGTGTGTTTCTCTCAAAGGCTAGCAGTTTTGCAGACACTATGGGCACCCTGAAGGACATTCACTGGATGAAGTAGAGCC
AGGACCTGAATTGGAGCTTAATGAAGGAAGAAGACTCAGCTGTCCTCCTTTCACAGGTGTTGAGGAGAAAGTTTGCTCTG
AAGGAAGAGGATATCAGCATGAAAGGAAAC

Alignment

ORF - retro_meug_1948 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.58 %
• Parental protein coverage: 68.28 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  LFVMQRNASVPNLRGPEERLLALKKPGLPALSRTTELQDELSHLRSQIAKIVAADAASASLTPDLFSSG-
          LFVMQ.NASVP.LRGP.ER.LALKKPGL.ALSRTTELQDELSHL..QIAKIVAADA.SASLTPDLF.SG.
Retrocopy LFVMQHNASVPKLRGP*ERFLALKKPGLSALSRTTELQDELSHLCCQIAKIVAADATSASLTPDLF-SG<

Parental  SSNVSSPLPCFG-SSFHSTTSFVISDITEEA-ELEGPELPSVPMLCSASSECCKTDSKAACSLVEDDDCV
          SS.VS.P.PCFG.SSFHSTTSFVISDITEEA..LEGPELPSVPMLCSA.SECCKTDSKA..SL.ED.DCV
Retrocopy SSKVSFP*PCFG>SSFHSTTSFVISDITEEA<QLEGPELPSVPMLCSAISECCKTDSKASWSLAEDSDCV

Parental  SLSKASSFADMMGILKDIHRMKQSQDLNRSLMKEEDPAVLISEVLRRKFALKEEDISVKGN
          .LSKASSFAD.MG.LKDIH.MK.SQDLN.SLMKEED.AVL.S.VLRRKFALKEEDIS.KGN
Retrocopy FLSKASSFADTMGTLKDIHWMK*SQDLNWSLMKEEDSAVLLSQVLRRKFALKEEDISMKGN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1948 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1948 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000012794	1 retrocopy	retro_fcat_667,
Macropus eugenii	ENSMEUG00000016175	4 retrocopies	retro_meug_1948 , retro_meug_2133, retro_meug_359, retro_meug_557,
Myotis lucifugus	ENSMLUG00000010738	1 retrocopy	retro_mluc_338,
Tursiops truncatus	ENSTTRG00000012479	2 retrocopies	retro_ttru_1262, retro_ttru_327,
Vicugna pacos	ENSVPAG00000004314	1 retrocopy	retro_vpac_458,