RetrogeneDB ID: retro_mluc_338

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430776:101122..102001(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000030477
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000010738
• Aliases: None
• Description: None

Sequence

>retro_mluc_338
AAGTCGGGAATGGAAGCCAATGCGACCATCCCGATCTGGCAGAATAAACCGCATGGGGCTGCTCGCAGTGTAGTGAGAAG
AATTGGGACCAACCTGCCCCTGAAGCCATGTCCCCGGGCGTCCTTTGAGACCCTGCCCAATGTCTCTGATCTGTGTCTGA
GGGATGTGCCCCCAGTCCCTACTCTGGCTGATATCGCCTGGATTGCTGCAGATGAAGAGGAGACATACGCCCGGGTCAGG
AGTGATACACGCCCCCTGAGGCACACTTGGAAGCCCAGCCCTCTGATTGTCATGCAGCGCAATGCCTCAGTGCCCAACCT
GCGTGGGTCCGAGGAGAGGCTCCTAGCCTTGAAGAAGCCAGCCCTGCCAGCCCTGAGCCGCACCACAGAGCTGCAGGATG
AGCTGAGCCACCTGCGCAACCAGATTGCTAAGATAGTGGCAGCCGATACAGCTTCGGCTTCATTAACGCCAGATTTCTTA
TCTCCAGGAAGTTCAAATGTCTCTTCTCCCTTACCTTGTTTTGGATCCTCATTCCACTCTACAACTTCCTTTGTCATTAG
TGACATCACTGAGGAGACCGAGGTAGAGGTCCCTGAGCTTCCATCAGTCCCCCTGCTTTGTTCTGCCAGCCCTGAATGTT
GCAAACTGGAACACAAAGCTACCTGCAGCTCATCTGAAGAGGATGACTGTGTCTCTCTGTCCAAGGCCAGCAGCTTTGCA
GATATGATGGGGATCCTGAAGGACTTTCACCGGATGAAACAGAGTCAAGATCTGAACCGGAGTTTACTGAAGGAGGAGGA
CCCTGCTGTCCTTATCTCTGAGGTCCTAAGAAGGAAGTTTGCTCTGAAGGAAGAAGATTTCAGTAGAAAAGGAAACTGA

Alignment

ORF - retro_mluc_338 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.93 %
• Parental protein coverage: 99.66 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GEKKNITIPIWQNKPHGAARSVVRRIGTNLPLKPCPRASFETLPNVSDLCLRDVPPVPTLADIAWIAADE
          G...N.TIPIWQNKPHGAARSVVRRIGTNLPLKPCPRASFETLPNVSDLCLRDVPPVPTLADIAWIAADE
Retrocopy GMEANATIPIWQNKPHGAARSVVRRIGTNLPLKPCPRASFETLPNVSDLCLRDVPPVPTLADIAWIAADE

Parental  EETYARVRSDTRPLRHTWKPSPLIVMQRNASVPNLRGSEERLLALKKPALPALSRTTELQDELSHLRSQI
          EETYARVRSDTRPLRHTWKPSPLIVMQRNASVPNLRGSEERLLALKKPALPALSRTTELQDELSHLR.QI
Retrocopy EETYARVRSDTRPLRHTWKPSPLIVMQRNASVPNLRGSEERLLALKKPALPALSRTTELQDELSHLRNQI

Parental  AKIVAADTASASLTPDFLSPGSSNVSSPLPCFGSSFHSTTSFVISDITEETEVEVPELPSVPLLCSASPE
          AKIVAADTASASLTPDFLSPGSSNVSSPLPCFGSSFHSTTSFVISDITEETEVEVPELPSVPLLCSASPE
Retrocopy AKIVAADTASASLTPDFLSPGSSNVSSPLPCFGSSFHSTTSFVISDITEETEVEVPELPSVPLLCSASPE

Parental  CCKPEHKATCSSSEEDDCVSLSKASSFADMMGILKDFHRMKQSQDLNRSLLKEEDPAVLISEVLRRKFAL
          CCK.EHKATCSSSEEDDCVSLSKASSFADMMGILKDFHRMKQSQDLNRSLLKEEDPAVLISEVLRRKFAL
Retrocopy CCKLEHKATCSSSEEDDCVSLSKASSFADMMGILKDFHRMKQSQDLNRSLLKEEDPAVLISEVLRRKFAL

Parental  KEEDFSRKGN
          KEEDFSRKGN
Retrocopy KEEDFSRKGN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_338 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000012794	1 retrocopy	retro_fcat_667,
Macropus eugenii	ENSMEUG00000016175	4 retrocopies	retro_meug_1948, retro_meug_2133, retro_meug_359, retro_meug_557,
Myotis lucifugus	ENSMLUG00000002331	1 retrocopy	retro_mluc_2227,
Myotis lucifugus	ENSMLUG00000010738	1 retrocopy	retro_mluc_338 ,
Tursiops truncatus	ENSTTRG00000012479	2 retrocopies	retro_ttru_1262, retro_ttru_327,
Vicugna pacos	ENSVPAG00000004314	1 retrocopy	retro_vpac_458,