RetrogeneDB ID: retro_meug_557

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold13609:20934..21576(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MTFR1L
• Ensembl ID: ENSMEUG00000016175
• Aliases: None
• Description: mitochondrial fission regulator 1-like [Source:HGNC Symbol;Acc:28836]

Sequence

>retro_meug_557
GTCAGGAGTGACACCCCACCCTTGCATCACAAGTGGAAGCACAGCCCGCTGTTTGTCATGCAGTGCAGTGTCTCAGTGCC
CAGCCTTCGAGGGCTGGAAGACAGGCTCCTGGTCTTGAAGAAGCCTGGCCTACCAACCCTGAGCAGAACCACTGAATTAC
AAGATGAGCTAAATCACCTACACAGCCAGATTACCAAGTTTGTGGCAGCAAATGCAACCTTGGTTTCATTAACACCAGAT
CTCTTCTCTTCAGGAAGTTCAAATGTCTCTTCTCCCTTACCTTGTTTTGGGTCCTCACTCCACTCTACAACTTTCTTTGT
CATTAGCGACATCACAGAAGAGGACGAGTTAGAAAGGACTGAGCTTTCATCCGTTCCCATGCTTTGTTCCACCAGCTCCG
AATATTGTAAAACTGACTCCAAAGCTGCCTACATCCCGGTTGAAGATGACGACTGTGTGTCTGTCTGAAAGATTAGCGGC
TTTTCAGACATGATGGGCATCCTGAAGGACATTCACCTGATAAAACAGAGACTAGACCTGAGTTGGAGTTTGATGAAGAA
AGAAGCCCCAGCTATCCTCATTTCAGAGGTGTTGAGGAGAAAGTTTGCTCTGAAGGAAGAGGATATCAGCATGAAAGGGA
AC

Alignment

ORF - retro_meug_557 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 78.5 %
• Parental protein coverage: 73.79 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VRYDTRPLRHKWKPSPLFVMQRNASVPNLRGPEERLLALKKPGLPALSRTTELQDELSHLRSQIAKIVAA
          VR.DT.PL.HKWK.SPLFVMQ...SVP.LRG.E.RLL.LKKPGLP.LSRTTELQDEL.HL.SQI.K.VAA
Retrocopy VRSDTPPLHHKWKHSPLFVMQCSVSVPSLRGLEDRLLVLKKPGLPTLSRTTELQDELNHLHSQITKFVAA

Parental  DAASASLTPDLFSSGSSNVSSPLPCFGSSFHSTTSFVISDITEEAELEGPELPSVPMLCSASSECCKTDS
          .A...SLTPDLFSSGSSNVSSPLPCFGSS.HSTT.FVISDITEE.ELE..EL.SVPMLCS.SSE.CKTDS
Retrocopy NATLVSLTPDLFSSGSSNVSSPLPCFGSSLHSTTFFVISDITEEDELERTELSSVPMLCSTSSEYCKTDS

Parental  KAACSLVEDDDCVSLSKASSFADMMGILKDIHRMKQSQDLNRSLMKEEDPAVLISEVLRRKFALKEEDIS
          KAA...VEDDDCVS..K.S.F.DMMGILKDIH..KQ..DL..SLMK.E.PA.LISEVLRRKFALKEEDIS
Retrocopy KAAYIPVEDDDCVSV*KISGFSDMMGILKDIHLIKQRLDLSWSLMKKEAPAILISEVLRRKFALKEEDIS

Parental  VKGN
          .KGN
Retrocopy MKGN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_557 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_557 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 5 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000012794	1 retrocopy	retro_fcat_667,
Macropus eugenii	ENSMEUG00000016175	4 retrocopies	retro_meug_1948, retro_meug_2133, retro_meug_359, retro_meug_557 ,
Myotis lucifugus	ENSMLUG00000010738	1 retrocopy	retro_mluc_338,
Tursiops truncatus	ENSTTRG00000012479	2 retrocopies	retro_ttru_1262, retro_ttru_327,
Vicugna pacos	ENSVPAG00000004314	1 retrocopy	retro_vpac_458,