RetrogeneDB ID: | retro_meug_543 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold134229:1981..2708(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CSNK1D | ||
Ensembl ID: | ENSMEUG00000008792 | ||
Aliases: | None | ||
Description: | casein kinase 1, delta [Source:HGNC Symbol;Acc:2452] |
Percent Identity: | 80.24 % |
Parental protein coverage: | 59.08 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | MELRVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVK-TKHPQLHIESKIYKMMQGGVGIPTIK |
MELRVGNR..LG.KIGS.SFG.IYLGTDI.A.E..AIKLE.VK.TKHPQLHIE.KIYKMMQGGVGIP.IK | |
Retrocopy | MELRVGNR*PLGGKIGSSSFGGIYLGTDISA-EKLAIKLEYVK>TKHPQLHIEKKIYKMMQGGVGIPKIK |
Parental | WCGAEGDYNVMVMELLGPSLEDLFNFCSRKFSLK-TVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGL |
WC.AE..YNVMVMELLGPS.E..FN.CSRKFS.K..VL.LADQMI..IEYIHS.NFIH.DVKPDNF.MGL | |
Retrocopy | WCEAEEEYNVMVMELLGPSFEVVFNCCSRKFSVK<IVLVLADQMITQIEYIHSNNFIHHDVKPDNFPMGL |
Parental | GKKGNLVYIIDFGLAKKYRDARTHQHIPYR-ENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFN |
.K.GNL.Y.I.FGLAKKY.DARTHQHIP...ENKNL.GT..YASIN.HLGIEQSRRDDLESL.YVLMYFN | |
Retrocopy | EKMGNLAYTIYFGLAKKY*DARTHQHIPIA<ENKNLIGTVLYASINAHLGIEQSRRDDLESLEYVLMYFN |
Parental | LGSLPWQ-GLKAATKRQKYERISEKKMSTPIEVLCKGY |
LGSL.W..GLKAA.KRQKYERIS.KKMSTPIEVL.KGY | |
Retrocopy | LGSLSWR<GLKAAIKRQKYERISAKKMSTPIEVLRKGY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Macropus eugenii | ENSMEUG00000008792 | 1 retrocopy |
retro_meug_543 ,
|
Macropus eugenii | ENSMEUG00000012543 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000014866 | 1 retrocopy | |
Sorex araneus | ENSSARG00000005475 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000007638 | 2 retrocopies |