RetrogeneDB ID: | retro_sara_33 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_216050:7710..8715(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSARG00000001029 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CSNK1D | ||
Ensembl ID: | ENSSARG00000005475 | ||
Aliases: | None | ||
Description: | casein kinase 1, delta [Source:HGNC Symbol;Acc:2452] |
Percent Identity: | 68.98 % |
Parental protein coverage: | 70.44 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | DIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELLGPSLEDLFNFCS |
.I..GEEVA.KLE..K..HPQL..ESK.YK..QGGVGIP.IRW.G.E.D.N..VM.LLGPSLEDLFNFCS | |
Retrocopy | NITSGEEVAVKLESQKARHPQLLYESKLYKILQGGVGIPHIRWYGQEKDHNILVMDLLGPSLEDLFNFCS |
Parental | RKFSLKTVLLLADQMISRIEYFLSKNFIHRDVSPDIFLKGLGKKGNPVYIIDFWWAKKNREPLAHQHIPY |
R.F..KTVL.LADQMISRIEY...KNFIHRD..PD.FL.G.G...N....IDF..AKK.R.....QHIPY | |
Retrocopy | RRFTMKTVLMLADQMISRIEYVHTKNFIHRDIKPDNFLMGIGHHCNKLFLIDFGLAKKYRDNRTRQHIPY |
Parental | RKNMNLTGTGRYPPINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPI |
R...NLTGT.RY..IN.HLGIEQSRRDD.ESLGYVLMYFN...LPWQGLKAATK.QKYE.ISEKKMSTP. | |
Retrocopy | REDKNLTGTARYASINAHLGIEQSRRDDMESLGYVLMYFNRTNLPWQGLKAATKKQKYEKISEKKMSTPV |
Parental | EVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDWNMLKFGASRAA |
EVLCKG.P.EFA.YLN.CR.LRF...PDY.YLRQLFR.LF......YDY.FDW.MLK..A...A | |
Retrocopy | EVLCKGFPAEFAMYLNYCRGLRFEEAPDYTYLRQLFRILFRTLNHQYDYTFDWTMLKQKAAQQA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Macropus eugenii | ENSMEUG00000008792 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000014866 | 1 retrocopy | |
Sorex araneus | ENSSARG00000005475 | 1 retrocopy |
retro_sara_33 ,
|
Sorex araneus | ENSSARG00000009110 | 2 retrocopies | |
Sorex araneus | ENSSARG00000011446 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000007638 | 2 retrocopies |