RetrogeneDB ID: | retro_ogar_264 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873674.1:3821858..3823091(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOGAG00000014302 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOGAG00000014866 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.27 % |
Parental protein coverage: | 95.1 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MELRVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGASWAVPVA |
MELRVGNRYRLGRKIGSGSFGDIYLGTDIAAGE.VA.KLECVKTKHPQLHIES.IYKM.QGG.....P.. | |
Retrocopy | MELRVGNRYRLGRKIGSGSFGDIYLGTDIAAGEQVAMKLECVKTKHPQLHIESRIYKMIQGGVG--IPTI |
Parental | QWVGRQP--HILRVAVLNPALVVSKYNSSLRKFASQSSPVLSPRPISRIEYIHSKNFIHRDVKPDNFLMG |
.W.G............L.P.L.....N...RKF.......L....ISRIEY.HSKNFIH.D.KPDNFLMG | |
Retrocopy | RWCGAEGDYNVIVMELLGPSLE-DLFNFCSRKFSLKTVLLLADQMISRIEYLHSKNFIHQDIKPDNFLMG |
Parental | LGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFN |
LGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFN | |
Retrocopy | LGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFN |
Parental | LGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLF |
LG.LPWQGLKAATK.QKYERISEKKMSTPIEVLCKGYP.EFATYL.FCRSLRFDDKPDYSYLRQLFRNLF | |
Retrocopy | LGTLPWQGLKAATKGQKYERISEKKMSTPIEVLCKGYPPEFATYLSFCRSLRFDDKPDYSYLRQLFRNLF |
Parental | HRQGFSYDYVFDWNMLKFGASRAADDTERERRDREERLRHSRNPATRGLPSTASGRLRGTQEVAPPTPLT |
HRQGFSYDYVFDWNMLKFGA.RAADDTERERRDREER.RHSRNP.TRGLPS.ASGR...TQEVA.PTPLT | |
Retrocopy | HRQGFSYDYVFDWNMLKFGATRAADDTERERRDREERMRHSRNPTTRGLPSAASGRPWVTQEVATPTPLT |
Parental | PTSHTANTSPRPVSGMERERKVSMRLHRGAPVNISSSDLTGRQDTSRMSTSQRSRDVASL |
PTSHT.NTSPRPVSGMERERKVSMRLHRGAP........T.R..TS.......S....S. | |
Retrocopy | PTSHTVNTSPRPVSGMERERKVSMRLHRGAPGDPTGRQDTSRMSTSQIPGRAASSGLQSV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Macropus eugenii | ENSMEUG00000008792 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003253 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000008746 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000011587 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000014866 | 1 retrocopy |
retro_ogar_264 ,
|
Otolemur garnettii | ENSOGAG00000016063 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000016785 | 1 retrocopy | |
Sorex araneus | ENSSARG00000005475 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000007638 | 2 retrocopies |