RetrogeneDB ID: | retro_shar_260 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL835636.1:4058..4779(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CSNK1D | ||
Ensembl ID: | ENSSHAG00000007638 | ||
Aliases: | None | ||
Description: | casein kinase 1, delta [Source:HGNC Symbol;Acc:2452] |
Percent Identity: | 79.34 % |
Parental protein coverage: | 61.64 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | EYIHSKNFIHRDVKPDNFLMGLGKK-GNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTH |
EYIH.KNF..RDVKPDNFLMGLGKK.GN.VYIIDF.L.KKY.DARTHQHI.Y.ENKNLTGT..Y.SINTH | |
Retrocopy | EYIHLKNFLYRDVKPDNFLMGLGKK>GNVVYIIDFRLTKKYQDARTHQHISYCENKNLTGTPHYVSINTH |
Parental | LGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFC |
LGIEQS.RDDLE.LGYVLMY..LGSLPWQGLKAATKRQKYERISEK...T.IE.LCK.Y.SEFATYLNFC | |
Retrocopy | LGIEQSQRDDLEFLGYVLMYYSLGSLPWQGLKAATKRQKYERISEKEIFTAIEMLCKSYSSEFATYLNFC |
Parental | RSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDWNMLKFGASRAADDAERERRDREERLRHSRNPTTRG |
.SL.FDDK.DYSYLRQ.FRNLFH.Q.FSYDYVFD.N.LKFGA..AADDA.RE...RE..L..S.N.TT.G | |
Retrocopy | HSLHFDDKSDYSYLRQIFRNLFHHQDFSYDYVFD*NILKFGANQAADDAKREHWNRENQL-NSQNTTTWG |
Parental | LPSTASGRLRGTQDVAPPTPLTPTSHTANTSP |
L.STASG.LR.TQDVAPPT.LTPTSHTAN.SP | |
Retrocopy | LLSTASGHLRETQDVAPPTLLTPTSHTANISP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Macropus eugenii | ENSMEUG00000008792 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000014866 | 1 retrocopy | |
Sorex araneus | ENSSARG00000005475 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000007638 | 2 retrocopies |
retro_shar_260 , retro_shar_710,
|
Sarcophilus harrisii | ENSSHAG00000015356 | 1 retrocopy |