RetrogeneDB ID: retro_mluc_1243

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429808:6929166..6929768(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RAB2B
• Ensembl ID: ENSMLUG00000001902
• Aliases: None
• Description: None

Sequence

>retro_mluc_1243
GGTGTGGGGAAGTCATGTCTCCTACTGCTGTTTACAGACAAGCAGTTCCAGCCTGTCCACAACCTCACCATAGGTGTGGA
GTTTGGGGCCCGTATGGTCAACATTGATGGAAAACAAATCAAACTGAAAATCTGGAATATGCCTGGGTAAGAATCCTTCC
ATTCTATCACCTGTTCCTACTACAGGAGAACAGCTGGAGCACTGCTGGTGTATGACATTATAAGCGTGAAACCTTCAACC
ACTGGACCCCTTGGTTAGAGGATGCCCGGCAGCACTCTAGTTCCAATATGGTTATCATGCTGATTGGGAATAAGAGTGAC
TTAGAGTCCCGCAGAGATGTGAAGAAAGAAGAAGGGAAGGCCTTTGCTCGGGAGCATGGACTTATATTCATGGAAACTTC
AGCCAAAACAGCCTGCAATGTTGAAGAGCCCTTCATTAACACAGCCAAAGAAATATATAGGAAGATCCAGCAGGGTTTAT
TTCATGTCCACAATGAGGCAAATGGCATCAAGATGGGTCCTCAACAGTGTATTTCAACATCAGTGGCACCCATCACCTCC
CAGTAGAACTCTGGTGACATAGAGTCCAACTCTGGCTGCTGC

Alignment

ORF - retro_mluc_1243 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.12 %
• Parental protein coverage: 93.06 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV
          GVGKSCLLL.FTDK.FQPVH.LTIGVEFGARMVNIDGKQIKL.IW...G.ESF.SIT.SYYR..AGALLV
Retrocopy GVGKSCLLLLFTDKQFQPVHNLTIGVEFGARMVNIDGKQIKLKIWNMPG*ESFHSITCSYYRRTAGALLV

Parental  YDIT-RRETFNHLTSWLEDARQHSSSNMVIMLIGNKCDLESRRDVKKEEGEAFAREHGLIFMETSAKTAC
          YDI...RETFNH.T.WLEDARQHSSSNMVIMLIGNK.DLESRRDVKKEEG.AFAREHGLIFMETSAKTAC
Retrocopy YDII<KRETFNHWTPWLEDARQHSSSNMVIMLIGNKSDLESRRDVKKEEGKAFAREHGLIFMETSAKTAC

Parental  NVEEAFINTAKEIYRKIQQGLFDVHNEANGIKIGPQQCISTSVAPIASQRNSGDIESNSGCC
          NVEE.FINTAKEIYRKIQQGLF.VHNEANGIK.GPQQCISTSVAPI.SQ.NSGDIESNSGCC
Retrocopy NVEEPFINTAKEIYRKIQQGLFHVHNEANGIKMGPQQCISTSVAPITSQ*NSGDIESNSGCC

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1243 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 16 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000044207	1 retrocopy	retro_btau_991,
Canis familiaris	ENSCAFG00000005641	1 retrocopy	retro_cfam_1510,
Choloepus hoffmanni	ENSCHOG00000000710	3 retrocopies	retro_chof_2314, retro_chof_706, retro_chof_900,
Cavia porcellus	ENSCPOG00000026575	1 retrocopy	retro_cpor_839,
Macropus eugenii	ENSMEUG00000010489	2 retrocopies	retro_meug_2160, retro_meug_91,
Myotis lucifugus	ENSMLUG00000001902	3 retrocopies	retro_mluc_1243 , retro_mluc_1251, retro_mluc_2103,
Myotis lucifugus	ENSMLUG00000008820	2 retrocopies	retro_mluc_1606, retro_mluc_2435,
Myotis lucifugus	ENSMLUG00000009818	1 retrocopy	retro_mluc_1875,
Sorex araneus	ENSSARG00000004969	1 retrocopy	retro_sara_97,
Ictidomys tridecemlineatus	ENSSTOG00000001886	1 retrocopy	retro_itri_468,