RetrogeneDB ID: | retro_mluc_2435 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL430395:295423..296125(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAB11A | ||
Ensembl ID: | ENSMLUG00000008820 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.08 % |
Parental protein coverage: | 91.19 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | PAAT-PPGPTATTAAPAPSLLGRAMGTRD-DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG |
PAAT.PPGPT...A.PAPSLL..AMG....D.Y..LFKVVLI.DS.VGK..LLS.FT.N.FNLESKST.G | |
Retrocopy | PAAT>PPGPTHSIATPAPSLL--AMGAHE<DKYVNLFKVVLIRDSSVGKNYLLSQFT*NKFNLESKSTTG |
Parental | VEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS |
VEFAT.SIQVDGKT.KA.IWDTAGQER..AIT.AY..GAVGAL.V.DIAKHLTYENVERWLKELRD..D. | |
Retrocopy | VEFAT*SIQVDGKTMKAPIWDTAGQERF*AITLAYCHGAVGALMVGDIAKHLTYENVERWLKELRDQTDI |
Parental | NIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRR |
N.VIM.VGNKSD.RHLRAVPT.EAR.FAEKNGLSFI.TSALDS.NVEAAFQ..L.EIYR.VSQK.MSD.. | |
Retrocopy | NTVIMHVGNKSDVRHLRAVPTHEARIFAEKNGLSFIGTSALDSANVEAAFQRVLAEIYRTVSQKEMSDVK |
Parental | ENDMSPSNNVVPIHVPPTTENKPKVQCCQN |
....SP.NN.VPIHVPPTTENKPKVQCCQN | |
Retrocopy | IT--SPRNNAVPIHVPPTTENKPKVQCCQN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000018959 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000007333 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000004920 | 5 retrocopies | |
Homo sapiens | ENSG00000103769 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000014252 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000001902 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000008820 | 2 retrocopies |
retro_mluc_1606, retro_mluc_2435 ,
|
Myotis lucifugus | ENSMLUG00000009818 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000008006 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012853 | 1 retrocopy | |
Petromyzon marinus | ENSPMAG00000009335 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000006573 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007188 | 1 retrocopy |