RetrogeneDB ID: | retro_mluc_1606 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429871:2926538..2926938(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAB11A | ||
Ensembl ID: | ENSMLUG00000008820 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.81 % |
Parental protein coverage: | 50.96 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | AVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKN-GLSFIE |
AVGALLV.DIAKHLT.EN.ER.LKELR.HADSNIVIMLVG.KSDL.HLRAVPTDEARAFA....GLSF.E | |
Retrocopy | AVGALLVDDIAKHLTCENAERRLKELRGHADSNIVIMLVGHKSDLCHLRAVPTDEARAFAXXX>GLSFFE |
Parental | TSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSNNVVPIHVPPTTENKPKVQCCQNI |
TSALDSTNVEAAFQTILTEI.RIVSQKQMSDRRENDMSPSN.VVPIHVPPTTENKPKVQC.QNI | |
Retrocopy | TSALDSTNVEAAFQTILTEIHRIVSQKQMSDRRENDMSPSNSVVPIHVPPTTENKPKVQCYQNI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000018959 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000007333 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000004920 | 5 retrocopies | |
Homo sapiens | ENSG00000103769 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000014252 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000001902 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000008820 | 2 retrocopies |
retro_mluc_1606 , retro_mluc_2435,
|
Myotis lucifugus | ENSMLUG00000009818 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000008006 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012853 | 1 retrocopy | |
Petromyzon marinus | ENSPMAG00000009335 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000006573 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007188 | 1 retrocopy |