RetrogeneDB ID: retro_mluc_2466

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430472:63208..63870(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MRPL1
• Ensembl ID: ENSMLUG00000011011
• Aliases: None
• Description: None

Sequence

>retro_mluc_2466
TTACTTAAGAAATTTCAAATTCTGGACTTTACATATCCAAAGCGAGGTGTTTATCTTGATTTGACACTGGACATGGCACT
GGGGAAGAAAAAAGAGTGGAGCCATTTGCCAGTGTTGTTAGTTTGCCATACCCATTCGTTTCAGAAATCAATAAAGTTGC
TGTATTTACAGGGAATGCATCAGAAATTAAAATAGCAGAAGAACAGGGAGCTGCGTTTGCAGGAGGAACTAATCTGATTC
AGAAGATTTTGGATGAAGAAATTGAGCCAGACATTTATGTAGCTGTTCCAGAAATTATGCCCGAGCTTAATCCATTAAAG
AGGAAACTGAAAAAAAGATTTCCAAAGCTTAATCAAAATTCCATTGGCCTTGACATCCCCAAAATGCTTGAATTATTTAA
AACTGGAATTGAAATTAAGGTAGATGAAGAAAGGGTGAACTTTCTCTTGACCAAAATAGCAACACTGGATATGTCAAGTG
ACCAGATAGCTGCCAATCTGCAAGCTGTTATCAATGAAGTTTGTAGGCACAGACCGCTGAATTTGGGACCCTTTGTGGTA
TGAGCTTTCCTTCGTAGTTCGACAAGCAAAGGTTTGTTACTAAAGATGGAGCCATTGTTACCTAAAGAAGTGGAAACCAA
AGAAAGTAGCAAAGAAGCTGCC

Alignment

ORF - retro_mluc_2466 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.89 %
• Parental protein coverage: 67.17 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  LLKKFQILDFTHPKQGVYLDLTLDMAQGKKK-KVEPFASVVSLPYPFVSEINKVAVFTGNASEIKIAEEH
          LLKKFQILDFT.PK.GVYLDLTLDMA.GKKK..VEPFASVVSLPYPFVSEINKVAVFTGNASEIKIAEE.
Retrocopy LLKKFQILDFTYPKRGVYLDLTLDMALGKKK<RVEPFASVVSLPYPFVSEINKVAVFTGNASEIKIAEEQ

Parental  GAAFAGGTNLIQKILDDEIEPDFYVAVPEIMPELNPLKKKLKKRFPKLNRNSIGRDIPKMLELFKTGIEI
          GAAFAGGTNLIQKILD.EIEPD.YVAVPEIMPELNPLK.KLKKRFPKLN.NSIG.DIPKMLELFKTGIEI
Retrocopy GAAFAGGTNLIQKILDEEIEPDIYVAVPEIMPELNPLKRKLKKRFPKLNQNSIGLDIPKMLELFKTGIEI

Parental  KVDEERENFLSTKIAILDMSSDQITANLQAVVNEVCRHRPLNLGPFVVRAFLRSSTSEGLLLKMEPLLPK
          KVDEER.NFL.TKIA.LDMSSDQI.ANLQAV.NEVCRHRPLNLGPFVV.AFLRSSTS.GLLLKMEPLLPK
Retrocopy KVDEERVNFLLTKIATLDMSSDQIAANLQAVINEVCRHRPLNLGPFVV*AFLRSSTSKGLLLKMEPLLPK

Parental  EVETKESSKEAA
          EVETKESSKEAA
Retrocopy EVETKESSKEAA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2466 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Equus caballus	ENSECAG00000024511	1 retrocopy	retro_ecab_665,
Myotis lucifugus	ENSMLUG00000011011	2 retrocopies	retro_mluc_2466 , retro_mluc_534,
Pteropus vampyrus	ENSPVAG00000002696	2 retrocopies	retro_pvam_67, retro_pvam_913,
Tursiops truncatus	ENSTTRG00000011899	1 retrocopy	retro_ttru_1405,