RetrogeneDB ID: | retro_pvam_67 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | GeneScaffold_122:114787..115413(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPL1 | ||
Ensembl ID: | ENSPVAG00000002696 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein L1 [Source:HGNC Symbol;Acc:14275] |
Percent Identity: | 85.85 % |
Parental protein coverage: | 64.31 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | SYPFMEGEPEDDVYLKRLYPRQIYEVKK-AIHLLKKFQILDFTNPKQGVYLDLTLDIALGKKKKVEPFAS |
SYPFMEGEPEDDVYLK.LYPRQIYE..K.A.HLLKKFQILD.TNPKQGVYLDLTLD.AL.KKKKVEPFAS | |
Retrocopy | SYPFMEGEPEDDVYLKCLYPRQIYEMEK<ALHLLKKFQILDLTNPKQGVYLDLTLDMALRKKKKVEPFAS |
Parental | VLSFPYPFTSEINKVAVFTGNASEIKIAEENGAAFAGGTNLIQKILDDEIQSDYYVAVPEIMPELNPLKK |
VL.FP....SEINKVAVFTGNASEIKIA.ENGAAF.GGTNLI.KILDDEIQSDYYVAVP.IMPELNPLKK | |
Retrocopy | VLIFPCQLASEINKVAVFTGNASEIKIAGENGAAFVGGTNLIRKILDDEIQSDYYVAVP*IMPELNPLKK |
Parental | KL-KKRFPKFTRNSIGRDIPKMLE-LFKTGHEIKVDEERENFLKTKIATLDMSSDQIAANLQAVINEVCR |
KL....FPK.TRNSIG.DIPK.LE..FKTGHEIKVDEERE.FL.TKIATL.MSSDQIAANLQAV.NEVCR | |
Retrocopy | KL>XXXFPKLTRNSIGCDIPKILE<IFKTGHEIKVDEERESFLETKIATLYMSSDQIAANLQAVNNEVCR |
Parental | HR |
HR | |
Retrocopy | HR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000024511 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000011011 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000002696 | 2 retrocopies |
retro_pvam_67 , retro_pvam_913,
|
Tursiops truncatus | ENSTTRG00000011899 | 1 retrocopy |