RetrogeneDB ID: | retro_mluc_2467 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL430474:137251..138453(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMLUG00000028446 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ZC3H15 | ||
Ensembl ID: | ENSMLUG00000007741 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 91.29 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | DKTFGLKNKKGAKQQKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKIS |
DKTFGLKNKKGAKQQKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKIS | |
Retrocopy | DKTFGLKNKKGAKQQKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKIS |
Parental | KGADPKSVVCAFFKQGQCTKGDKCKFSHDLTLERKGEKRSVYIDARDEELEKDTMDNWDEKKLEEVVNKK |
K.ADPKSVVCAFFKQGQCTKGDKCKFSHDLTLERKGEKRSVYIDARDEELEKDTM.NWDEKKLEEVVNKK | |
Retrocopy | KAADPKSVVCAFFKQGQCTKGDKCKFSHDLTLERKGEKRSVYIDARDEELEKDTMENWDEKKLEEVVNKK |
Parental | HGEAEKKKPKTQIVCKHFLDAIEN-NKYGWFWVCPGGGDICMYRHALPPGFVLKKDKKKEEKEDEISLED |
HGEAEKKKPKTQIVCKHFLDAI...NKYGWFWVCPGGGDICMYRHALPPGFV..............SLED | |
Retrocopy | HGEAEKKKPKTQIVCKHFLDAIDT<NKYGWFWVCPGGGDICMYRHALPPGFVXXXXXXXXXXXXXXSLED |
Parental | LIERERAALGPNVTKITLESFLAWKKRKRQEKIDKLEQDMERRKADFKAGKALVISGREVFEFRPELVDD |
LIERERAALGPNVTKITLESFLAWKKRKRQEKI.KLEQDMERRKADFKAGKALVISGREVFEFRPELVDD | |
Retrocopy | LIERERAALGPNVTKITLESFLAWKKRKRQEKINKLEQDMERRKADFKAGKALVISGREVFEFRPELVDD |
Parental | DDEEADDTRYTQGAGGDEVDDSVSINDIDVSLYIPRDVDETGITVASRERFSAYAAERDENKLSEASGGR |
DDEEADDT.YTQGAGGDEVDD.VSINDIDVSLYIPRDVDETGITVASRERFSAYAAERDENKLSEASGGR | |
Retrocopy | DDEEADDTSYTQGAGGDEVDDLVSINDIDVSLYIPRDVDETGITVASRERFSAYAAERDENKLSEASGGR |
Parental | AENGERSDLEEDHGGEGPEDGVGAAVPVDENLFTGEDLEELEEELNTLDLEE |
AEN.ERSDLEEDHGGEGPE.GVG.AVPVDENLFT.........ELNTLDLE. | |
Retrocopy | AENSERSDLEEDHGGEGPENGVGVAVPVDENLFTXXXXXXXXXELNTLDLEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000012965 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000001563 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000007741 | 2 retrocopies |
retro_mluc_1494, retro_mluc_2467 ,
|
Monodelphis domestica | ENSMODG00000027565 | 5 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000011903 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000015790 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000005256 | 4 retrocopies |