RetrogeneDB ID: | retro_rnor_925 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 13:66350341..66351619(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Zc3h15 | ||
Ensembl ID: | ENSRNOG00000005256 | ||
Aliases: | None | ||
Description: | Zinc finger CCCH domain-containing protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q6U6G5] |
Percent Identity: | 94.37 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQQKFIKAVTHQVKFGQQNPRQVAQSEAEKKLK |
MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQQKFIKAVTHQVKFGQQNPRQVAQSEAEKKLK | |
Retrocopy | MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQQKFIKAVTHQVKFGQQNPRQVAQSEAEKKLK |
Parental | KDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKFSHDLTLERKCEKRSVYIDA |
KDDKKKEL.ELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKFSHDLTLERKCEKRSV.IDA | |
Retrocopy | KDDKKKEL*ELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKFSHDLTLERKCEKRSVCIDA |
Parental | RDEELEKDTMDNWDEKKLEEVVNKKHGEAEKKKPKTQIVCRHFLEAIENNKYGWFWVCPGGGDNCMYRHA |
RDEELEKDTMDNWDEKKLEEVVNKKHGEA.......QIVCRHFLEAIENNKYGWFWV.PGGGDNCMYRHA | |
Retrocopy | RDEELEKDTMDNWDEKKLEEVVNKKHGEAXXXXXXXQIVCRHFLEAIENNKYGWFWVYPGGGDNCMYRHA |
Parental | LPPGFVLKKDKKKEEKEDEISLEDLIERERSALGPNVTKITLESFLAWKKRKRQEKIDKLEQDMERRKAD |
LPPG.V............EISLEDLIERERSALGPNVTKITLESFLAWKKRKRQEKIDKLEQDMERRKAD | |
Retrocopy | LPPGCVXXXXXXXXXXXXEISLEDLIERERSALGPNVTKITLESFLAWKKRKRQEKIDKLEQDMERRKAD |
Parental | FKAGKALVISGREVFEFRPELVNDDDEEADDTRYIQGTGGDEVDDSVGVNDIDLSLYVPRDVEETGITVA |
FKAGKALVISGREVFEFRPELVNDDDEEADDTRYIQGTGGDEVDDSVGVNDIDLSLYVPRDVEETGITVA | |
Retrocopy | FKAGKALVISGREVFEFRPELVNDDDEEADDTRYIQGTGGDEVDDSVGVNDIDLSLYVPRDVEETGITVA |
Parental | SLERFSTYASDKDENKLSEASGGLAENGERSDLDEDSGGGGQENGSIDAVPVDENLFTGEDLDELEEELN |
SLERFSTYASDKDENKLSEASGGLAENGERSDLDED.GGGGQENGSIDAVPVDENLFTGEDLDELEEELN | |
Retrocopy | SLERFSTYASDKDENKLSEASGGLAENGERSDLDEDNGGGGQENGSIDAVPVDENLFTGEDLDELEEELN |
Parental | TLDLEE |
TLDLEE | |
Retrocopy | TLDLEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .22 RPM | 47 .16 RPM |
SRP017611_kidney | 0 .56 RPM | 46 .75 RPM |
SRP017611_liver | 0 .00 RPM | 23 .94 RPM |
EST ID | Start | End | Identity | Match | Mis-match | Score |
---|---|---|---|---|---|---|
CK595160 | 66350284 | 66350947 | 99.6 | 646 | 2 | 632 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000021762 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000011958 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000005931 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000012965 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000011664 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000001563 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000007741 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000027565 | 5 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000011903 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000002182 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000015790 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000012717 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000005256 | 4 retrocopies | |
Sorex araneus | ENSSARG00000012071 | 1 retrocopy |