RetrogeneDB ID: | retro_mdom_1744 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 7:165138617..165139205(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMODG00000014809 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMODG00000027565 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.89 % |
Parental protein coverage: | 90. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | DEISLEDLIERERSALGPNVTKITLESFLAWKKRKRQEKIDKLEQDMERRKADFKAGKALVISGREVFEF |
DEISL.D.IERE.SA.GPNVTK.T.E.FLAWKKRKRQEKID.LEQDMERRKADFKAGKAL.ISG.EVFEF | |
Retrocopy | DEISLGDIIEREHSA*GPNVTKNT*ETFLAWKKRKRQEKIDELEQDMERRKADFKAGKALMISGQEVFEF |
Parental | RPELVDDDDEEADDTRYTQGTGGDEVEDLIRINDIDLSQYVPKDVDETGITVASLERFSTYTSIEKDDNK |
.PELVDDDDEE.DDTRYTQGTG.DEVEDLIRIN.IDLSQYVPKDVDETGITV.SLE.FSTYT..EKDDNK | |
Retrocopy | CPELVDDDDEETDDTRYTQGTGSDEVEDLIRINYIDLSQYVPKDVDETGITVPSLEKFSTYT-VEKDDNK |
Parental | LSEASGGGAENGEQSDLEENNEEQENGVIGAVPVDENLFTGEDLDELEEELNTLDLEE |
LSEA.GG.AENGEQSDLEENNE.QENGVIGAVPVDENLFTGEDLDEL.EELNTLDLEE | |
Retrocopy | LSEALGGEAENGEQSDLEENNEGQENGVIGAVPVDENLFTGEDLDEL-EELNTLDLEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000021762 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000011958 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000005931 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000012965 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000011664 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000001563 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000007741 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000027565 | 5 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000011903 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000002182 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000015790 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000012717 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000005256 | 4 retrocopies | |
Sorex araneus | ENSSARG00000012071 | 1 retrocopy |