RetrogeneDB ID: | retro_mluc_2480 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL430513:919..1432(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMLUG00000024917 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMD8 | ||
Ensembl ID: | ENSMLUG00000009902 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.03 % |
Parental protein coverage: | 50.29 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | EQLPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKV-FLAK |
EQLPE.A..HQLLG.NLLFLL.QN.VAEFH.E.E.LPAKDIQT.VYIKHP..LEQYLMEGS.NKV..LAK | |
Retrocopy | EQLPELACIHQLLGHNLLFLLPQNWVAEFHMEWEWLPAKDIQTHVYIKHPGPLEQYLMEGSNNKV<VLAK |
Parental | GNIPAESYTFFIDILLDTIRDEIAGCIEKAYEKILFTEATRILFFNTPKKMTDYAKKRGWVLGLNNYYSF |
GNIPAE..TFF.DILLDT.R.EI.GC.EKAYEKILF.EATRILFFNTP.K.TDY.KKR..VLGL..Y.SF | |
Retrocopy | GNIPAER*TFFMDILLDTVREEITGCMEKAYEKILFSEATRILFFNTPQKTTDYTKKRARVLGLISYDSF |
Parental | ASQQQKPEDTTIPSTELAKQVIE-YARQLEMIV |
ASQQQ.PED.TIPSTELA.QVI...ARQLEMI. | |
Retrocopy | ASQQQNPEDNTIPSTELAEQVIK>NARQLEMIL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000005931 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000009902 | 2 retrocopies |
retro_mluc_2137, retro_mluc_2480 ,
|
Monodelphis domestica | ENSMODG00000013151 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000002956 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000014464 | 1 retrocopy |