>retro_sscr_195
TTTGCCACATCACGGAAGATGGCAGTCACAACAGTGAACGAGGTGGCGGGTGGCTCGAGCTGGGGGCCTGCAGTGGCCTT
GGGCCCAGTCCTGCAGGCCGCAGCCGGCATGTACGAACAACTCAAGGGCAAGTGGAACCATGAAAGCCCCAATCTTAGCA
AATGCAGTGAAGAACTGGGCCGTCTCAAGCTGGTTCTGTTGGAGCTCAACTTCCTGCCAACCACAGGGACCAAACTGACC
AAACAGCAGCTCATTCTGCCCCATGACATACTAGAGATTGGGGCCCAGTGGAGTAGCTTACACAAGGACATCCCCTCCTT
TTAGCGGTACATGGTCCAGCTCAAGTGTTGCTACTTTGATTACGAATAGCTCCCAGAGTCAGCCTATATGCACCAGCTCT
TGGGGCTCAACCTCGTCTTCCTGCTGTCTCAGCACCAGGTAGCTGAGTTCCACACAGAGCTGGAGTGGCCACCTGCCAAG
GACATCCAGACCAATGTATACATCAAGCAGCCGGTGTCCCTGGAGCAATACCTGATGGAGGGCAGCTACAATAAGGTGTT
CCTGGCCAAAGGAAACATCCCTGTAGAGAGCTGTACATTCTTCATTGACATCCTGTTTGACACTATCAGGGACGAGATTG
CTGGCTGCATCGAGAAGGCCTATGAAAAAATCCTCCTCACTGAGGCCACTCGGATCCTCTTCTTCAACACACCCAAAAAG
ATGACGGACTATGCCAGGAAGCGAGGGTGGATCCTGGGCCTCAACAACTACTACAGCTTTGTCAGCCAGCAGCAGAACCC
AGAAGAAACCACCATCTCCTCTTCAGAGCTGGCCAAACAGGTCATCAAGTACACCTGGCAGCTGGAGATGATTGTC
ORF - retro_sscr_195 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
86.01 % |
Parental protein coverage: |
83.48 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | FAASRKMAAATVNGVAGGSSSGPAAASGAVLQAAAGMYEQLKGEWNRKSPNLSKCGEELGRLKLVLLELN |
| FA.SRKMA..TVN.VAGGSS.GPA.A.G.VLQAAAGMYEQLKG.WN..SPNLSKC.EELGRLKLVLLELN |
Retrocopy | FATSRKMAVTTVNEVAGGSSWGPAVALGPVLQAAAGMYEQLKGKWNHESPNLSKCSEELGRLKLVLLELN |
|
Parental | FLPTTGTKLTKQQLILARDILEIGAQWSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLL |
| FLPTTGTKLTKQQLIL..DILEIGAQWS.L.KDIPSF.RYM.QLKC.YFDY.E.LPESAYMHQLLGLNL. |
Retrocopy | FLPTTGTKLTKQQLILPHDILEIGAQWSSLHKDIPSF*RYMVQLKCCYFDY-E*LPESAYMHQLLGLNLV |
|
Parental | FLLSQNRVAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTI |
| FLLSQ..VAEFHTELE..PAKDIQTNVYIK.PVSLEQYLMEGSYNKVFLAKGNIP.ES.TFFIDIL.DTI |
Retrocopy | FLLSQHQVAEFHTELEWPPAKDIQTNVYIKQPVSLEQYLMEGSYNKVFLAKGNIPVESCTFFIDILFDTI |
|
Parental | RDEIAGCIEKAYEKILFTEATRILFFNTPKKMTDYAKKRGWVLGLNNYYSFASQQQKPEDTTIPSTELAK |
| RDEIAGCIEKAYEKIL.TEATRILFFNTPKKMTDYA.KRGW.LGLNNYYSF.SQQQ.PE.TTI.S.ELAK |
Retrocopy | RDEIAGCIEKAYEKILLTEATRILFFNTPKKMTDYARKRGWILGLNNYYSFVSQQQNPEETTISSSELAK |
|
Parental | QVIEYARQLEMIV |
| QVI.Y..QLEMIV |
Retrocopy | QVIKYTWQLEMIV |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP014902_placenta |
0 .00 RPM |
104 .99 RPM |
SRP014902_testis |
0 .14 RPM |
60 .40 RPM |
SRP018288_heart |
0 .03 RPM |
46 .76 RPM |
SRP018288_kidney |
0 .20 RPM |
81 .86 RPM |
SRP018288_liver |
0 .32 RPM |
98 .66 RPM |
SRP018288_lung |
0 .00 RPM |
69 .45 RPM |
SRP018856_adipose |
0 .17 RPM |
73 .63 RPM |
SRP035408_brain |
0 .00 RPM |
85 .53 RPM |
SRP035408_liver |
0 .26 RPM |
67 .22 RPM |
Sus scrofa was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_sscr_195 retrocopy.
Sus scrofa was not studied using FANTOM5 data.
retro_sscr_195 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_sscr_195 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
5 parental genes, and
6 retrocopies.