Parental gene: | PSMD8, ENSCAFG00000005931 |
| Aliases: | None |
| Description: | proteasome (prosome, macropain) 26S subunit, non-ATPase, 8 [Source:HGNC Symbol;Acc:9566] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 1:114619889..114626281(-) |
>ENSCAFG00000005931
ATGTTCGTTAAGGGCCGGACTCCCAGGGCACCTCCCCGAGAGCGACTAAACGCTAACGGCGGCGGGCGGAGGCCTGCAGC
CGTAGCCCCGCCCCCGGCGCTGGGCTCCACCTCCCGGCCCCACTTCCGCCGGGTGAGCGTCTGTCGGCGTCGCTGCCGTA
AGGCGGGCCGGAGGTTTGCCGCATCACGGAAGATGGCGGCCACGGCGGTGAACGGGGCGCCGGGCGCCTCGGGCTCGGGC
CCTGCGGCGGCCTCGGGCGCAGTCCTGCAGGTCGCGGCCGGCATGTACGAGCAACTTAAGGGCGAGTGGAACCGTAAAAG
CCCCAATCTTAGCAAGTGCGGTGAAGAGCTGGGCCGTCTCAAGCTGGTTCTGCTGGAACTCAACTTCTTGCCAACCACAG
GGACCAAACTGACCAAACAGCAGCTCATTCTGGCCCGTGACATTCTGGAGATTGGGGCCCAGTGGAGCATCCTGCGCAAG
GACATCCCCTCCTTCGAGCGCTACATGGCCCAGCTCAAATGCTACTACTTTGATTACAAGGAGCAACTCCCCGAGTCAGC
CTACATGCACCAGCTCTTGGGCCTCAACCTCCTCTTCCTGCTATCCCAGAACCGGGTAGCTGAGTTCCACACAGAGTTGG
AGCGGCTGCCTGCCAAGGACATCCAGACCAATGTATACATCAAGCATCCCGTGTCCCTGGAGCAATACCTGATGGAGGGC
AGCTATAACAAGGTGTTCCTGGCCAAAGGCAACATCCCTGCTGAGAGCTATACCTTCTTCATTGACATCTTGCTTGACAC
GATCAGGGATGAGATTGCTGGGTGCATCGAGAAGGCCTATGAGAAAATCCTTTTCACTGAGGCCACCCGGATCCTCTTCT
TCAACACACCCAAAAAGATGACGGACTACGCCAAGAAGCGAGGGTGGGTTCTGGGCCTCAACAACTACTACAGCTTTGCC
AGCCAGCAGCAGAAGCCAGAAGACACCACCATCCCCTCCACGGAACTGGCCAAACAGGTCATCGAGTATGCCCGGCAGCT
GGAGATGATCGTCTGA
ATGTTCGTTAAGGGCCGGACTCCCAGGGCACCTCCCCGAGAGCGACTAAACGCTAACGGCGGCGGGCGGAGGCCTGCAGC
CGTAGCCCCGCCCCCGGCGCTGGGCTCCACCTCCCGGCCCCACTTCCGCCGGGTGAGCGTCTGTCGGCGTCGCTGCCGTA
AGGCGGGCCGGAGGTTTGCCGCATCACGGAAGATGGCGGCCACGGCGGTGAACGGGGCGCCGGGCGCCTCGGGCTCGGGC
CCTGCGGCGGCCTCGGGCGCAGTCCTGCAGGTCGCGGCCGGCATGTACGAGCAACTTAAGGGCGAGTGGAACCGTAAAAG
CCCCAATCTTAGCAAGTGCGGTGAAGAGCTGGGCCGTCTCAAGCTGGTTCTGCTGGAACTCAACTTCTTGCCAACCACAG
GGACCAAACTGACCAAACAGCAGCTCATTCTGGCCCGTGACATTCTGGAGATTGGGGCCCAGTGGAGCATCCTGCGCAAG
GACATCCCCTCCTTCGAGCGCTACATGGCCCAGCTCAAATGCTACTACTTTGATTACAAGGAGCAACTCCCCGAGTCAGC
CTACATGCACCAGCTCTTGGGCCTCAACCTCCTCTTCCTGCTATCCCAGAACCGGGTAGCTGAGTTCCACACAGAGTTGG
AGCGGCTGCCTGCCAAGGACATCCAGACCAATGTATACATCAAGCATCCCGTGTCCCTGGAGCAATACCTGATGGAGGGC
AGCTATAACAAGGTGTTCCTGGCCAAAGGCAACATCCCTGCTGAGAGCTATACCTTCTTCATTGACATCTTGCTTGACAC
GATCAGGGATGAGATTGCTGGGTGCATCGAGAAGGCCTATGAGAAAATCCTTTTCACTGAGGCCACCCGGATCCTCTTCT
TCAACACACCCAAAAAGATGACGGACTACGCCAAGAAGCGAGGGTGGGTTCTGGGCCTCAACAACTACTACAGCTTTGCC
AGCCAGCAGCAGAAGCCAGAAGACACCACCATCCCCTCCACGGAACTGGCCAAACAGGTCATCGAGTATGCCCGGCAGCT
GGAGATGATCGTCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 73 .12 RPM |
| SRP017611_kidney | 122 .37 RPM |
| SRP017611_liver | 36 .98 RPM |
| SRP012049_cerebellum | 82 .28 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Myotis lucifugus | ENSMLUG00000009902 | ortholog_one2one | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000013151 | possible_ortholog | 1 retrogene | |
| Sus scrofa | ENSSSCG00000002956 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000014464 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_2206 | 70.08 | 71.79 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCAFG00000005931 retrocopies