RetrogeneDB ID: retro_mluc_2483

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430520:164115..164698(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000023168
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: CAPZA1
• Ensembl ID: ENSMLUG00000009796
• Aliases: None
• Description: None

Sequence

>retro_mluc_2483
AAAATTCCCTTTAAGTTTGATCACTTATGGAAAGAAGCAAGTGTCCCCCAGCCAGAGGAAGTAGATGGAGATCTGAAGTC
TTGGAGAGAATCCTGTGACAGTGCTTTAAGGGCCTATGTGAAAGACCATTATTCCAGTGGCTTCTGTACTGTTTATGCTA
AAACTATAGATGGGCAACAGACCATTATTGCGTGTATTGAAAGCCACCAGTTTCAGCCTAAAAATTTCTGGAATGGTCGT
TGGAGATCAGAATGGGAAGTTCACCATCACACCGCCTACAGCCCAGGTGGTTGGAGTACTTAAGATTCAGGTACACTATT
ATGAAGATGGCAATGCTCAGTTGGTTAGTCATAAACACGTACAGAATTCAGTAACTGTTTCGAAGGAAGCACAAACTGCC
AAGGAGTTTATTAAAATCATAGAACATGCAGAAAATGAGTATCAGACAGCAATTAGTGAAAATGATCAAACAATGTTGGA
CACCACATTCAAAGCCTTGTGCCGGCAGCTTCCAGTTACCCGCACCAAAATCGACTGGAACAAGATACTCAGCTACAAGA
TTGGCAAAGAAATGCAGAGTGCT

Alignment

ORF - retro_mluc_2483 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.86 %
• Parental protein coverage: 67.94 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  KISFKFDHLRKEASDPQPEEVDGGLKSWRESCDSALRAYVKDHYSSGFCTVVYAKTIDGQQTIIACIESH
          KI.FKFDHL.KEAS.PQPEEVDG.LKSWRESCDSALRAYVKDHYSSGFCTV.YAKTIDGQQTIIACIESH
Retrocopy KIPFKFDHLWKEASVPQPEEVDGDLKSWRESCDSALRAYVKDHYSSGFCTV-YAKTIDGQQTIIACIESH

Parental  QFQPKNFWNGRWRSEW-KFTITPPTAQVVGVLKIQVHYYEDGNVQLVSHKDVQDSVTVSNEAQTAKEFIK
          QFQPKNFWNGRWRSEW.KFTITPPTAQVVGVLKIQVHYYEDGN.QLVSHK.VQ.SVTVS.EAQTAKEFIK
Retrocopy QFQPKNFWNGRWRSEW>KFTITPPTAQVVGVLKIQVHYYEDGNAQLVSHKHVQNSVTVSKEAQTAKEFIK

Parental  IIEHAENEYQTAISENYQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGKEMQNA
          IIEHAENEYQTAISEN.QTM.DTTFKAL.RQLPVTRTKIDWNKILSYKIGKEMQ.A
Retrocopy IIEHAENEYQTAISENDQTMLDTTFKALCRQLPVTRTKIDWNKILSYKIGKEMQSA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2483 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 12 parental genes, and 21 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000003570	1 retrocopy	retro_amel_219,
Latimeria chalumnae	ENSLACG00000017963	1 retrocopy	retro_lcha_20,
Myotis lucifugus	ENSMLUG00000007910	1 retrocopy	retro_mluc_2595,
Myotis lucifugus	ENSMLUG00000009796	1 retrocopy	retro_mluc_2483 ,
Mustela putorius furo	ENSMPUG00000004977	1 retrocopy	retro_mputfur_616,
Mus musculus	ENSMUSG00000070372	4 retrocopies	retro_mmus_179, retro_mmus_1828, retro_mmus_3370, retro_mmus_349,
Oryctolagus cuniculus	ENSOCUG00000000270	6 retrocopies	retro_ocun_1315, retro_ocun_1417, retro_ocun_1787, retro_ocun_301, retro_ocun_527, retro_ocun_555,
Rattus norvegicus	ENSRNOG00000013538	1 retrocopy	retro_rnor_77,
Sorex araneus	ENSSARG00000001278	1 retrocopy	retro_sara_166,
Ictidomys tridecemlineatus	ENSSTOG00000015956	1 retrocopy	retro_itri_1044,
Tarsius syrichta	ENSTSYG00000006259	2 retrocopies	retro_tsyr_179, retro_tsyr_471,
Vicugna pacos	ENSVPAG00000005361	1 retrocopy	retro_vpac_579,