Parental gene:

Capza1, ENSRNOG00000013538

Aliases:None
Description:F-actin-capping protein subunit alpha-1 [Source:UniProtKB/Swiss-Prot;Acc:B2GUZ5]
Organism:Rat (Rattus norvegicus)
Coordinates:2:226722918..226767300(-)


>ENSRNOG00000013538
ATGGCCGACTTCGAGGATCGGGTGTCGGATGAGGAGAAGGTACGCATAGCCGCTAAATTCATCACCCATGCACCCCCAGG
GGAGTTCAATGAAGTATTCAATGATGTCCGGCTACTGCTTAATAATGACAATCTTCTCAGGGAAGGGGCAGCACATGCAT
TTGCCCAGTATAACATGGATCAGTTCACACCTGTGAAGATAGAAGGCTACGACGACCAGGTCTTAATTACAGAGCATGGC
GACCTTGGTAACAGCAGATTTTTAGATCCAAGAAACAAAATTTCCTTTAAGTTTGATCATTTACGGAAAGAAGCGAGTGA
CCCGCAGCCAGAGGATGTGGATGGAGGCTTGAAGTCTTGGAGAGACTCGTGTGACAGTGCACTGAGAGCCTATGTGAAAG
ATCATTATTCCAACGGCTTCTGTACTGTTTACGCTAAAACCATAGATGGACAGCAGACCATTATTGCATGTATTGAAAGC
CACCAGTTTCAACCCAAAAACTTCTGGAATGGTCGTTGGAGATCAGAGTGGAAGTTCACCATCACACCACCTACAGCCCA
GGTGGTTGGAGTGCTCAAGATTCAGGTTCATTATTATGAAGATGGCAATGTTCAGCTGGTTAGTCATAAAGATGTGCAGG
ACTCAGTAACTGTTTCTAATGAAGTCCAAACTGCCAAGGAGTTTATTAAAATCATAGAGAGTGCAGAAAATGAGTATCAG
ACAGCAATTAGTGAAAATTATCAAACTATGTCAGACACCACGTTCAAGGCCTTGCGCCGGCAGCTTCCAGTTACCCGCAC
CAAAATCGACTGGAACAAGATACTCAGTTACAAGATTGGCAAAGAAATGCAGAATGCTTAA

Library Parental gene expression (RPM)
SRP017611_brain 43 .43 RPM
SRP017611_kidney 59 .31 RPM
SRP017611_liver 26 .69 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003570 possible_ortholog 1 retrogene
retro_amel_219,
Choloepus hoffmanni ENSCHOG00000004131 possible_ortholog 8 retrogenes
retro_chof_1008, retro_chof_1419, retro_chof_1499, retro_chof_1704, retro_chof_1861, retro_chof_2129, retro_chof_625, retro_chof_711,
Callithrix jacchus ENSCJAG00000013548 possible_ortholog 3 retrogenes
retro_cjac_2259, retro_cjac_2850, retro_cjac_4125,
Cavia porcellus ENSCPOG00000014532 possible_ortholog 1 retrogene
retro_cpor_1155,
Dipodomys ordii ENSDORG00000000671 possible_ortholog 3 retrogenes
retro_dord_224, retro_dord_265, retro_dord_44,
Felis catus ENSFCAG00000013303 possible_ortholog 2 retrogenes
retro_fcat_700, retro_fcat_746,
Homo sapiens ENSG00000116489 possible_ortholog 2 retrogenes
retro_hsap_2338, retro_hsap_4871,
Gorilla gorilla ENSGGOG00000023677 possible_ortholog 1 retrogene
retro_ggor_1216,
Latimeria chalumnae ENSLACG00000017963 ortholog_one2many 1 retrogene
retro_lcha_20,
Myotis lucifugus ENSMLUG00000009796 ortholog_one2many 1 retrogene
retro_mluc_2483,
Macaca mulatta ENSMMUG00000015668 possible_ortholog 2 retrogenes
retro_mmul_2612, retro_mmul_942,
Mustela putorius furo ENSMPUG00000004977 ortholog_one2many 1 retrogene
retro_mputfur_616,
Mus musculus ENSMUSG00000070372 ortholog_one2one 4 retrogenes
retro_mmus_179, retro_mmus_1828, retro_mmus_3370, retro_mmus_349,
Nomascus leucogenys ENSNLEG00000004191 possible_ortholog 1 retrogene
retro_nleu_1689,
Oryctolagus cuniculus ENSOCUG00000000270 possible_ortholog 6 retrogenes
retro_ocun_1315, retro_ocun_1417, retro_ocun_1787, retro_ocun_301, retro_ocun_527, retro_ocun_555,
Otolemur garnettii ENSOGAG00000014074 possible_ortholog 4 retrogenes
retro_ogar_1640, retro_ogar_2159, retro_ogar_3217, retro_ogar_845,
Pongo abelii ENSPPYG00000001021 possible_ortholog 2 retrogenes
retro_pabe_2116, retro_pabe_3789,
Pan troglodytes ENSPTRG00000001110 possible_ortholog 2 retrogenes
retro_ptro_1710, retro_ptro_3245,
Sorex araneus ENSSARG00000001278 ortholog_one2many 1 retrogene
retro_sara_166,
Ictidomys tridecemlineatus ENSSTOG00000015956 possible_ortholog 1 retrogene
retro_itri_1044,
Tupaia belangeri ENSTBEG00000001727 possible_ortholog 5 retrogenes
retro_tbel_1870, retro_tbel_3525, retro_tbel_4327, retro_tbel_638, retro_tbel_868,
Tarsius syrichta ENSTSYG00000006259 ortholog_one2many 2 retrogenes
retro_tsyr_179, retro_tsyr_471,
Vicugna pacos ENSVPAG00000005361 ortholog_one2many 1 retrogene
retro_vpac_579,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_77 68.66 99.30
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Download FASTA sequences of all ENSRNOG00000013538 retrocopies