RetrogeneDB ID: | retro_ocun_301 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 1:122922652..122923167(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000000270 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.73 % |
Parental protein coverage: | 60.28 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | NDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYEDQVLITEHGDLGNSRFLDPRNKIS-FKFDHL- |
N..R...NN..LL.EGAAHAF..YNMDQFTPVKIEGYEDQ..ITEH.D.G.SRFLDPRNKIS..KFDHL. | |
Retrocopy | NLTRY*MNNGSLLTEGAAHAFSLYNMDQFTPVKIEGYEDQFSITEHSDMGKSRFLDPRNKIS<IKFDHL> |
Parental | RKEASDPQPEEVDGGLKSWRESCDSALRAYVKDHYSNGFCTVVYAKTIDGQQTIIACIESHQFQPKNFWN |
RK.ASDPQPEE.D..LKSWRES.DSAL.AYVKDHYSN.F.T.V.A.T.D.QQ..I.CIESHQFQ.KNFW. | |
Retrocopy | RKKASDPQPEEIDESLKSWRESSDSAL*AYVKDHYSNSFYT-VFATTTDRQQIFITCIESHQFQLKNFWS |
Parental | GRWRSEWKFTITPPTA-QVVGVLKIQVHYYEDGNVQ |
G...SE.KFT.TPP.A.QVVGV.KIQV...ED.NVQ | |
Retrocopy | GN*GSEHKFTTTPPIA<QVVGVFKIQVL*SEDDNVQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 20 .70 RPM |
SRP017611_kidney | 0 .00 RPM | 21 .99 RPM |
SRP017611_liver | 0 .00 RPM | 13 .72 RPM |