RetrogeneDB ID: | retro_ocun_555 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 12:33782662..33783172(-) | ||
Located in intron of: | ENSOCUG00000017240 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000000270 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.84 % |
Parental protein coverage: | 59.93 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | EDQVLITEHGDLGNSRFLDPRNKISFKFDHLRKEASDPQPEEVDGGLKSWRESCDSALRAYVKDHYSNGF |
EDQVLI.E..D.GNSRFL.PRNKISFK.DHL.KEA.DPQ.EE...GLKSWRE.CDSALRAYV.DH.SN.F | |
Retrocopy | EDQVLIIENNDPGNSRFLNPRNKISFKSDHLQKEARDPQSEEAAKGLKSWREPCDSALRAYVRDHSSNSF |
Parental | CTVVYAKTIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQVVGVLKIQVHYYEDGNVQLVSH |
CTV.YAKT.DGQQT..AC...H.FQ.KN..N..WRSEWKFTITPPT.Q..GVLKIQVHYY.DGN.QLVSH | |
Retrocopy | CTV-YAKTMDGQQTTTACTDNHLFQSKNL*NSCWRSEWKFTITPPTTQAAGVLKIQVHYYGDGNAQLVSH |
Parental | KDVQDSITVSNEIQTAKEFIKIIENAENEYQT |
K.V.DS..VSNE.QT..EFIK.I.N..NEYQT | |
Retrocopy | KSVPDSAIVSNEDQTV-EFIKHIKNTDNEYQT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 20 .70 RPM |
SRP017611_kidney | 0 .00 RPM | 21 .99 RPM |
SRP017611_liver | 0 .00 RPM | 13 .72 RPM |