RetrogeneDB ID: retro_mluc_2566

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430984:59299..61144(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000022874
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: ACO2
• Ensembl ID: ENSMLUG00000002472
• Aliases: None
• Description: None

Sequence

>retro_mluc_2566
CTCCTGGTGACCCGGCTGCAGAAAGCCCTGGGTGTGCGGCAGTACCATGTGGCCTCAGTCCTGTGCCAACGGGCCAAGGT
GGCCATGAGCCACTTTGAGCCCAATGATTACATCCGCTATGACCTGCTAGAGAAGAACATCGACATTGTTCGCAAAAGAC
TGAACCGGCCTCTGACCCTCTCTGAGAAGCTTGTGTATGGACACCTGGATGACCCAGCCAATCAGGCGGTCGAGCGGGCA
AGACGTACGTGCGGCTGCAGCTGTGGCCGGACCGCGTGGCCGTGCAGGACGCCACGGCCCAGATGGCCACGCTGCATATT
GTCAGCAGTGGGCTGCCCAAGGTGGCCGTGCCGCCCACCATCCACTGCGACCATCTGATCGAGGCCCAGGTCGGGGTTGA
GAAAGACCTTCTTCGGGCCAAGGACACAGACCAGGAAGTGTATAATTTCCTGGCAACTGCAGGTGCCAAGTATGGCATGG
GCTTCTGGTGGCCTGGCTCTGGAATCATTAACCAGATCATTCTGGAAAACTATGCATATCCTAGGGCTCTTCTGATTGGC
AATGATTCTCATATCCCCAGTGGCGGTGGCCTGGGGGACATCTGCATTGGAGTCAGGGATGCTGATGCCGTGGCCGTCAT
GGCTGCGATTCCCTGGGAGCTGAAGTGCCCCAAGGTGATTGGTGTGAAGCTGACGGGCTCACTCTCCGGTTGGACCTCAC
CCAAAGATGTGATCTTAAAGGTGCAGGCACCTGCACAGTGAAAGGTGGCATGGGCGCTATTGTGGAGCACCATGGGCCTG
GTGCAGACTCCATCTCCTGCACTGGCATGGCGACCATCTGCAACATGGGCGCAGAAATCGGGGCCACAACTTCAGTGTTT
CCTTACAACCACAGAATGAAGACTTACCTGAACAAGACAGGCCGGACAGACATTGCCAACCTAGCTGAGGAGTTCAAGGA
TCACCTGGTACCTGACCCTGGCTGCCACTATGGCCAAGTGATTGAAATTAACCTAAATGAGCTGAAGCCACTCATCAATG
GGCCCTTCACCCCTAACCTGGCTCACTCCGTGACAGAAGTGGGCGCTGTGGCCGAGAAGGAACGCTGGCCTGTGGACATC
AGGGTGGGTCTGATCATCAGCTGCACCAACTCCAGCTATGAGGACATGGGACGGTCAGCAACTGTGACCAAGCAGGCGCT
GGCTCACGGACTCAAGTGCAAGTCCCAGTTCACCATCACACCCGGCTCTGAGCAGATCCGCGCCACCACTGAGCTGGACG
TTGTGCACAGGTCCTGAGGGATGTGGGTGGCATTGTTCTGGCCAATGCCTGTGGCCCCTGCATTGGCCAGTGGGACAGAA
AGGACATCAAGAAGGGGGAGAAGAACACAATTGTCACCCCCTACAACAGGAACTTCACAGGTCGCAATGACGCGAACCCT
GAGACCCATGCCTTTGTCACATCCGCAGAGATTGTCACAGCCCTGGGCATTGCTGGCACCCTCAAGTTCAATCCCAAGAC
TGACTTCCCGACGGGCAAGGATGGCAAGAAGTTCCAGCTGGAGGCTCTGGATACAGATGAGCTTCCCCACACGAATTTCA
ACCCTGGGCAGAACACCTACCAGCACCCTCCCAAGGGTGGCCGTGGGCAGCGGGTGGACGTGAGCCCCACCAGCCAGCGT
CTGCAGCTCCTTGAGTCTTTTGACAAATGGGATGGCAAAGACCTGGAGGACCTTCAAATCCTTACCAAGGTCAAAGGGAA
GTGTACCACTGACCACATCACAGCTGCCGGCCCCTGGCTCAGGTTCTGTGGGCACCTGGACAACATCTCCAACAACTTGC
TCATT

Alignment

ORF - retro_mluc_2566 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.56 %
• Parental protein coverage: 78.91 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  LLPFFLQKALGVRQYHVASVLCQRAKVAMSHFEPNDYIRYDLLEKNIDIVRKRLNRPLTLSEKLVYGHLD
          LL...LQKALGVRQYHVASVLCQRAKVAMSHFEPNDYIRYDLLEKNIDIVRKRLNRPLTLSEKLVYGHLD
Retrocopy LLVTRLQKALGVRQYHVASVLCQRAKVAMSHFEPNDYIRYDLLEKNIDIVRKRLNRPLTLSEKLVYGHLD

Parental  DPANQEIER-GKTYLRLR--PDRVAMQDATAQMAMLQFISSGLPKVAVPSTIHCDHLIEAQVGGEKDLRR
          DPANQ..ER.GKTY.RL...PDRVA.QDATAQMA.L...SSGLPKVAVP.TIHCDHLIEAQVG.EKDL.R
Retrocopy DPANQAVER<GKTYVRLQLWPDRVAVQDATAQMATLHIVSSGLPKVAVPPTIHCDHLIEAQVGVEKDLLR

Parental  AKDINQEVYNFLATAGAKYGVGFWRPGSGIIHQIILENYAYPGALLIGTDSHTPNGGGLGAICIGVGGAD
          AKD..QEVYNFLATAGAKYG.GFW.PGSGII.QIILENYAYP.ALLIG.DSH.P.GGGLG.ICIGV..AD
Retrocopy AKDTDQEVYNFLATAGAKYGMGFWWPGSGIINQIILENYAYPRALLIGNDSHIPSGGGLGDICIGVRDAD

Parental  AVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKV-AGILTVKGGTGAIVEYHGPGVESISCTGMA
          AV.VMA.IPWELKCPKVIGVKLTGSLSGWTSPKDVILKV.AG..TVKGG.GAIVE.HGPG..SISCTGMA
Retrocopy AVAVMAAIPWELKCPKVIGVKLTGSLSGWTSPKDVILKV<AGTCTVKGGMGAIVEHHGPGADSISCTGMA

Parental  TICNMGAEIGATTSVFPYNHRMKTYLNKTGRAEIAKLAEEFKDHLVPDPGCQYDQVIEINLNELKPLING
          TICNMGAEIGATTSVFPYNHRMKTYLNKTGR..IA.LAEEFKDHLVPDPGC.Y.QVIEINLNELKPLING
Retrocopy TICNMGAEIGATTSVFPYNHRMKTYLNKTGRTDIANLAEEFKDHLVPDPGCHYGQVIEINLNELKPLING

Parental  PFTPDLAHSVAEVGAVAEKEGWPVDIRVGLIGSCTNSSYEDMGRSAAVAKQALAHGLKCKSQFTITPGSE
          PFTP.LAHSV.EVGAVAEKE.WPVDIRVGLI.SCTNSSYEDMGRSA.V.KQALAHGLKCKSQFTITPGSE
Retrocopy PFTPNLAHSVTEVGAVAEKERWPVDIRVGLIISCTNSSYEDMGRSATVTKQALAHGLKCKSQFTITPGSE

Parental  QIRATIERD-GYAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTIVTSYNRNFTGRNDANPETHAFV
          QIRAT.E.D...AQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTIVT.YNRNFTGRNDANPETHAFV
Retrocopy QIRATTELD<RCAQVLRDVGGIVLANACGPCIGQWDRKDIKKGEKNTIVTPYNRNFTGRNDANPETHAFV

Parental  TSPEIVTALAIAGTLKFNPETDF----DGKKFKLEAPNADELPHTNFDPGQDTYQHPPKDGSGQRVDVSP
          TS.EIVTAL.IAGTLKFNP.TDF....DGKKF.LEA...DELPHTNF.PGQ.TYQHPPK.G.GQRVDVSP
Retrocopy TSAEIVTALGIAGTLKFNPKTDFPTGKDGKKFQLEALDTDELPHTNFNPGQNTYQHPPKGGRGQRVDVSP

Parental  TSQRLQLLEPFEKWDGKDLEDLQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLI
          TSQRLQLLE.F.KWDGKDLEDLQIL.KVKGKCTTDHI.AAGPWL.F.GHLDNISNNLLI
Retrocopy TSQRLQLLESFDKWDGKDLEDLQILTKVKGKCTTDHITAAGPWLRFCGHLDNISNNLLI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2566 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000100412	2 retrocopies	retro_hsap_2583, retro_hsap_324,
Myotis lucifugus	ENSMLUG00000002472	1 retrocopy	retro_mluc_2566 ,
Macaca mulatta	ENSMMUG00000001454	2 retrocopies	retro_mmul_647, retro_mmul_694,
Mus musculus	ENSMUSG00000022477	1 retrocopy	retro_mmus_535,
Nomascus leucogenys	ENSNLEG00000015482	2 retrocopies	retro_nleu_1519, retro_nleu_1767,
Pongo abelii	ENSPPYG00000011871	1 retrocopy	retro_pabe_1903,
Pan troglodytes	ENSPTRG00000014428	1 retrocopy	retro_ptro_260,
Drosophila melanogaster	FBgn0010100	1 retrocopy	retro_dmel_56,