RetrogeneDB ID: | retro_mmul_647 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 10:78509328..78510548(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2851 | ||
Ensembl ID: | ENSMMUG00000001454 | ||
Aliases: | None | ||
Description: | aconitate hydratase, mitochondrial [Source:RefSeq peptide;Acc:NP_001248093] |
Percent Identity: | 83.09 % |
Parental protein coverage: | 52.18 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 1 |
Parental | LATAGAKYGVGFWKPGSGIIHQIILENYAYPGVLLIGTDSHTPNGGGLGGICIGVGGAD-AVDVMAGIPW |
LA.A...YG.GFWKPGSGI.HQ.ILENY.Y.GVLLI.TDSHTP.GG.LGGICIGVGGA...V.VM.GIPW | |
Retrocopy | LANASVRYGGGFWKPGSGITHQLILENYEYLGVLLIDTDSHTPSGGSLGGICIGVGGAE<TVGVMTGIPW |
Parental | ELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEIGA |
ELK.PKVIG.KL.GSLSGW.SPK.VILKVAGILTVKGGTGAIVEYHGPGVDSISCTGM...CNMG.EIGA | |
Retrocopy | ELKPPKVIGMKLMGSLSGWISPKGVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMVIVCNMGTEIGA |
Parental | TTSVFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDPGCHYDQLIEVNLSELKPHINGPFTPDLAHPVA |
TTSVFPYNH.MK.YLSKT.RADIANLADEF.DHLVPDPGCHYDQLIEVNLSELKPHINGPFTPDLA.PVA | |
Retrocopy | TTSVFPYNHTMK*YLSKTCRADIANLADEFEDHLVPDPGCHYDQLIEVNLSELKPHINGPFTPDLAPPVA |
Parental | EVGKVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAAVAKQALAHGLKCKSQFTITPGSEQIRATIERDGY |
EVGKVAEKEGWPLDI..GLIGSCTNSSYEDMG.SAAVAKQALAHGLKCKSQFTITP.SEQ...T.ERDG. | |
Retrocopy | EVGKVAEKEGWPLDI*LGLIGSCTNSSYEDMGHSAAVAKQALAHGLKCKSQFTITPCSEQMCTTTERDG* |
Parental | AQILRDLGGIVLANACGPCIGQWDRKDIKKGEKNTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIA |
AQ.LRD.GGIVLANACGPC.GQWDRKDIKK.EKN..VTSYNRNFTG.ND.NPETHAFVTSPE.VTALAI. | |
Retrocopy | AQTLRDVGGIVLANACGPCNGQWDRKDIKKQEKNITVTSYNRNFTGCNDTNPETHAFVTSPETVTALAIV |
Parental | GTLKFNPETDYLTGTDGKKFKLEAPDADELPKGEFDPGQDTYQHPPKDSSGQHVDVSP |
GTLKFNPET.YLTG.DGKKFKLE.PDAD.LP..E.DPG.DTYQH..K.....H....P | |
Retrocopy | GTLKFNPETNYLTGKDGKKFKLEGPDADGLPQAELDPG*DTYQHSCKGYH*SHLGCWP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 198 .67 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 426 .95 RPM |
SRP007412_cerebellum | 0 .00 RPM | 138 .38 RPM |
SRP007412_heart | 0 .00 RPM | 599 .63 RPM |
SRP007412_kidney | 0 .00 RPM | 412 .43 RPM |
SRP007412_liver | 0 .04 RPM | 124 .33 RPM |
SRP007412_testis | 0 .00 RPM | 98 .68 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2583 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000100412 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000002472 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000001454 | 2 retrocopies |
retro_mmul_647 , retro_mmul_694,
|
Mus musculus | ENSMUSG00000022477 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015482 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000011871 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000014428 | 1 retrocopy | |
Drosophila melanogaster | FBgn0010100 | 1 retrocopy |