>retro_mmul_694
ATGGCGCCATACAGCCTACTGATGATCTGGCTGCAGAAAGCTCTGGGTGTGCAGCAGTACCATGTGGCCACAGTCCTGTG
CCAACAGGCCAAGGTGGCGACGAGCCACTTTGAGTCCAAGTACGTCCACTATGACCTGCTAGAGAAGAACATTAACATTA
TTCGCAAACGATTGAACCGGCCTCTGACCCTCTCGGAGAAGATTGTGTATGGACACCTGGATGACCCCGCCAGCTAGGAA
ATCGAGTGGGGCAAGATGTACGTGCAGCAGCGGCCAGACAGCGTGGCCATGCAGGATGCGACGGCCCAGATGGCCATGCT
GCAGTTCATCAGCAGCAGGCTCCCAAGGTGACCGTGCTGTCCACCATCCACTGTGACCATCTGATTGAGGCCCAGCTCGG
GAGTGAAAAAGACCTGCGCCGGGCCAAGGACATCAACCACGAAGCTTATAATTTCCTGGCAAATGCAAGTGTCAGATATG
GCGGGGGCTTCTGGAAGCCTGGATCTGGAATCACTCACCAGCTTATTTTGGAAAACTATGAATACCTTGGGGTTCTTCTG
ATTGACACTGACTCCCATACCCCCAGTGGTGGCAGCCTGCGGGGCATCTGCATTGGAGTTGGGGGTGCTGAACTGTGGGT
GTCATGACTGGGATCCCCTGGGAGCTGAAGCGCCCCAAGGTGATTGGCATGAAGCTGATGGGCTCCCTCTCCGGTTGGAT
TTCACCCAAAGGTGTGATTCTGAAGGTGGCAGGCATCCTCACAGTGAAAGGTGGCACAGGTGCAATCGTGGAATACCACG
GGCCTGGTGTAGACTCCATCTCCTGCACTGGCATGGTGATAGTCTGCAACATGGGCACAGAAATTGGGGCCACCACTTCC
GTGTTTCCTTACAACCACAGGATGAAGTAGTACCTGAGCAAGACCTGCCGGGCAGACATTGCCGATCTAGCTGATGAATT
CGAGGATCACTTGGTGCCTGACCCTGGCTGCCATTATGACCAACTAATTGAAGTTAACCTCAGTGAACTGAAGCCGCACA
TCAATGGGCCCTTCACCCCTGACCTGGCTCCCCCCGTGGCAGAAGTGGGCAAGGTGGCAGAGAAGGAAGGATGGCCTCTG
GACATCTGACTGGGTCTGATTGGCAGCTGCACCAATTCAAGCTATGAAGATATGGGGCACTCAGCAGCTGTGGCCAAGCA
GGCACTAGCCCATGGCCTCAAGTGCAAGTCCCAGTTCACGATCACTCCATGCTCTGAGCAGATGTGCACCACCACTGAGT
GGGACGGCTAAGCACAGACCTTGAGGGATGTGGGCGGC
ORF - retro_mmul_694 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
83.97 % |
Parental protein coverage: |
56.54 % |
Number of stop codons detected: |
4 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | MAPYSLLVTRLQKALGVRQYHVASVLCQRAKVAMSHFEPNEYIHYDLLEKNINIVRKRLNRPLTLSEKIV |
| MAPYSLL...LQKALGV.QYHVA.VLCQ.AKVA.SHFE...Y.HYDLLEKNINI.RKRLNRPLTLSEKIV |
Retrocopy | MAPYSLLMIWLQKALGVQQYHVATVLCQQAKVATSHFE-SKYVHYDLLEKNINIIRKRLNRPLTLSEKIV |
|
Parental | YGHLDDPAGQEIERGKSYLRLRPDRVAMQDATAQMAMLQFISSGLP-KVAVPSTIHCDHLIEAQLGGEKD |
| YGHLDDPA..EIE.GK.Y...RPD.VAMQDATAQMAMLQFISS.LP.KV.V.STIHCDHLIEAQLG.EKD |
Retrocopy | YGHLDDPAS*EIEWGKMYVQQRPDSVAMQDATAQMAMLQFISSRLP<KVTVLSTIHCDHLIEAQLGSEKD |
|
Parental | LRRAKDINQEVYNFLATAGAKYGVGFWKPGSGIIHQIILENYAYPGVLLIGTDSHTPNGGGLGGICIGVG |
| LRRAKDIN.E.YNFLA.A...YG.GFWKPGSGI.HQ.ILENY.Y.GVLLI.TDSHTP.GG.L.GICIGVG |
Retrocopy | LRRAKDINHEAYNFLANASVRYGGGFWKPGSGITHQLILENYEYLGVLLIDTDSHTPSGGSLRGICIGVG |
|
Parental | GAD-AVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCT |
| GA...V.VM.GIPWELK.PKVIG.KL.GSLSGW.SPK.VILKVAGILTVKGGTGAIVEYHGPGVDSISCT |
Retrocopy | GAE<TVGVMTGIPWELKRPKVIGMKLMGSLSGWISPKGVILKVAGILTVKGGTGAIVEYHGPGVDSISCT |
|
Parental | GMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDPGCHYDQLIEVNLSELKPH |
| GM...CNMG.EIGATTSVFPYNHRMK.YLSKT.RADIA.LADEF.DHLVPDPGCHYDQLIEVNLSELKPH |
Retrocopy | GMVIVCNMGTEIGATTSVFPYNHRMK*YLSKTCRADIADLADEFEDHLVPDPGCHYDQLIEVNLSELKPH |
|
Parental | INGPFTPDLAHPVAEVGKVAEKEGWPLDIRVGLIGSCTNSSYEDMGRSAAVAKQALAHGLKCKSQFTITP |
| INGPFTPDLA.PVAEVGKVAEKEGWPLDI..GLIGSCTNSSYEDMG.SAAVAKQALAHGLKCKSQFTITP |
Retrocopy | INGPFTPDLAPPVAEVGKVAEKEGWPLDI*LGLIGSCTNSSYEDMGHSAAVAKQALAHGLKCKSQFTITP |
|
Parental | GSEQIRATIERDGYAQILRDLGG |
| .SEQ...T.E.DG.AQ.LRD.GG |
Retrocopy | CSEQMCTTTEWDG*AQTLRDVGG |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .00 RPM |
198 .67 RPM |
SRP007412_brain_prefrontal_cortex |
0 .00 RPM |
426 .95 RPM |
SRP007412_cerebellum |
0 .00 RPM |
138 .38 RPM |
SRP007412_heart |
0 .00 RPM |
599 .63 RPM |
SRP007412_kidney |
0 .00 RPM |
412 .43 RPM |
SRP007412_liver |
0 .00 RPM |
124 .33 RPM |
SRP007412_testis |
0 .00 RPM |
98 .68 RPM |
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_694 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_694 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmul_694 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
8 parental genes, and
11 retrocopies.