RetrogeneDB ID: retro_mluc_2613

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL431868:3126..3411(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000028312
• Aliases: None
• Description: None

Sequence

>retro_mluc_2613
GTGCAGCAGGCTCTCAGCTTTGCCGGCAGCCAATGCAACAGGGCCAGGAAGGACCCCTCCCACAGCCACGCCACGCGTGT
GGTGCGCGCCCACAAGCAGGTCGTGGCTGAGCTGAACTACTTACTGGACATGGAAATCGGTCAAACCACACACACCAAGT
CCCAGCCCAACTCGGCCAGCCTTCCCTGACCCACCGCACCTGAGAGAGACATCACTGGCTCTTTCCAGATAGACACTGTC
CCCTGGGTGGGCAGGATCTCCAGGGTGAAGTCCAAGGGCTGGGAC

Alignment

ORF - retro_mluc_2613 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 57.73 %
• Parental protein coverage: 64.67 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VQQALNFALSEYNKASNDAFHSRAMRVVRARKQLVAGLNYFLDVEIGRTTCTKSQPNLASCPFHVQPHLR
          VQQAL.FA.S..N.A..D..HS.A.RVVRA.KQ.VA.LNY.LD.EIG.TT.TKSQPN.AS.P....P...
Retrocopy VQQALSFAGSQCNRARKDPSHSHATRVVRAHKQVVAELNYLLDMEIGQTTHTKSQPNSASLP*PTAP--E

Parental  KEALCSFQVYTVPWLGKTSLVKSSCQD
          .....SFQ..TVPW.G..S.VKS...D
Retrocopy RDITGSFQIDTVPWVGRISRVKSKGWD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2613 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000010076	1 retrocopy	retro_amel_935,
Felis catus	ENSFCAG00000024003	1 retrocopy	retro_fcat_1975,
Loxodonta africana	ENSLAFG00000015020	1 retrocopy	retro_lafr_777,
Myotis lucifugus	ENSMLUG00000028312	2 retrocopies	retro_mluc_2081, retro_mluc_2613 ,
Mustela putorius furo	ENSMPUG00000001122	2 retrocopies	retro_mputfur_716, retro_mputfur_801,
Rattus norvegicus	ENSRNOG00000005195	1 retrocopy	retro_rnor_2853,