RetrogeneDB ID: retro_mputfur_716

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896940.1:3840883..3841330(-)
• Located in intron of: ENSMPUG00000001201

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000001122
• Aliases: None
• Description: None

Sequence

>retro_mputfur_716
ATGGCCGGGCACCTCCGCACCCCCCTGCTCCTGCTGGCCGCCCTGGCCCTGACCCTGGCACTGGCTGTGGACTTGGGTCC
CAGGGCAAGCCGGAAAAATGGCAAGTCTCCAATGGTGGGCGGCCTGTTGGACGCCGATGTCAACGAGGAGGGCGTGCAGC
AGGCGCTGAACTTCGCCCTCAGCGAGTACAACAAGGCGAGCAACGACGCGTACCACAGCCGCGCAATGCGCGTGGTGCGC
GTCCGCAAGCAGGTCGTGGCTGGATTGAACTAATTCTTGGAGGTGGAGATCGGACGAACCAGATGTACAAAGTCTCAGCC
CAACTTGGACAGCTGTCCCTTTCATGACCAGCCACACCTGATGAGGAAAACGCTCTGCTCTTTCCAGATATACACTGTCC
CCTGGCTGGGCAAGACCTCCTTGGTGAAGTCCAGCTGCCAGGATGCA

Alignment

ORF - retro_mputfur_716 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.33 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAGHLRTPLLLLAALALTLALAVDLGPRASRKNGKSPMVGGLLDADVNEEGVQQALNFALSEYNKASNDA
          MAGHLRTPLLLLAALALTLALAVDLGPRASRKNGKSPMVGGLLDADVNEEGVQQALNFALSEYNKASNDA
Retrocopy MAGHLRTPLLLLAALALTLALAVDLGPRASRKNGKSPMVGGLLDADVNEEGVQQALNFALSEYNKASNDA

Parental  YHSRAMRVVRVRKQVVAGLNYFLEVEIGRTRCTKSQPNLDSCPFHDQPHLMRKTLCSFQIYTVPWLGKTS
          YHSRAMRVVRVRKQVVAGLN.FLEVEIGRTRCTKSQPNLDSCPFHDQPHLMRKTLCSFQIYTVPWLGKTS
Retrocopy YHSRAMRVVRVRKQVVAGLN*FLEVEIGRTRCTKSQPNLDSCPFHDQPHLMRKTLCSFQIYTVPWLGKTS

Parental  LVKSSCQDA
          LVKSSCQDA
Retrocopy LVKSSCQDA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_716 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_716 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000010076	1 retrocopy	retro_amel_935,
Felis catus	ENSFCAG00000024003	1 retrocopy	retro_fcat_1975,
Loxodonta africana	ENSLAFG00000015020	1 retrocopy	retro_lafr_777,
Myotis lucifugus	ENSMLUG00000028312	2 retrocopies	retro_mluc_2081, retro_mluc_2613,
Mustela putorius furo	ENSMPUG00000001122	2 retrocopies	retro_mputfur_716 , retro_mputfur_801,
Mustela putorius furo	ENSMPUG00000001154	1 retrocopy	retro_mputfur_1490,
Rattus norvegicus	ENSRNOG00000005195	1 retrocopy	retro_rnor_2853,