RetrogeneDB ID: retro_mluc_358

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429954:291161..292754(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000007610
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: EZR
• Ensembl ID: ENSMLUG00000001931
• Aliases: None
• Description: None

Sequence

>retro_mluc_358
AAGGAGACCCCACCGGAACCGAAAATGCCAAAGCCGATCAATGTCCGAGTCACCACCATGGATGCGGAGCTGGAGTTTGC
CATCCAGCGGGACACCACAGGAAACCAGCTTTTTGATCAGGTGGTGAGGACGATCGGCCTGCGGGAGGTGTGGTACTTCG
GGCTCCAGTACGTAGATAACAAAGGATTTCCCACCTGGTTGAAGCTTGATAAAAAGGTGTCAGCCCAGAAGGTCAGGAAG
GAGAATCCCCTGCAGTTCAAGTTCAGGGCCAAGTTCTACCCCAAGGACGTGTGTGAGGAGCTCATCCAGGACATTACGCA
GAAGCTCTTCTTCCTCCAAGTGAAGGAGGGCATTCTGAGCAGTGAGATCTACTGCCCGCCGGAGACCGCGGTGCTCCTCG
GCTCCTACGCCGCGCAGGCCAAGTTCGGAGACTACGACAAAGACCTGCACAAGCCCGGGTACCTCAGCTCCGAGCGGCTG
ATCCCCCAGAGAGTCATGGACCAGCACAAGCTCACCAGGGACCAGTGGGAGGACCGGGTCCAGGTGTGGCACGCCGAGCA
CCGCGGGATGCTCAAAGACAGCGCCATGCTGGAGTACCTGAAGACCGCCCAGGACCTGGAAATGTACGGGATCAGCTATT
TTGAGATAAAAAATAAGAGAGGAACAGACCTGTGGCTTGGAGTGGATGCCCTGGGACTCAATATTTACGAGAAAGATCAT
AAGTTGACCCCAAAGATTGGCTTCCTGTGGGGTGAGATCAGGAACATCTCCTTCAATAAAAAGAAGTTTTTCATCAAGTT
CATCGACAGGAAGGCGCCTGACTTTGTCTTCTACGCCCCCTGCCTGCGCATCAACAAGCGGATCGTGCCGCTCTGCATGG
GGAACCAGGAGCTGTACATGCGCCGCAGGAAGCCTGACACCATCGAGGTGCAGCAGATGAAGGCCCAGGCCCGCGAGGAG
AAGCACCTGAGGCAGCTGGAGCGGCAGCAGCTGGAAACGGAGAAGAGGCGAGAGGCCGTGGAGAGGGAGAAGGAGCAGAT
GATGCCGGAGAAGGCCGAGAAAGAGCTCTCGGACCAGAACCAGAGGGCCCTGCGGCTGGAGGAGGAGCGGAAGACGGTGG
ATCAGAGAAAGAGCCAGGAGCAGCTGGCCGTGGCGCGCAGGCGCAAGGAGGACGAGGTGGAGGAGTGGCAGCACCAGGCC
GAGGAAGCCCAGGATGACCTGGTGAAGACCCAGGAGGAGCTGCAGCTGGTGATGACGGCGCCGCCCCCTGTGGACGAGCC
AGTGGCCTATCACGTCCGCGAGAACCTGCAGGAGGAGGGCGCGGAGGATTCGGGCTACAGCGCCGAGCTGTCCAGCGAGG
ACATCCTGGACGACCGCCAGGAGGAGAAGCGGGTCACCGAGGCCGAGAAGAACCTGCAGCAGCAGCTGATGACTCTGTCC
AGCGAGCTGTCCCAGGCCAGAGACGAGAACAAGAGGACCCACAACGACATCATCCACAAGGAGAACAGGAGGCAAGGCCG
CGACAAGTACAAGACGTTGCGGATCCGGCAGGGCAACACCAAGCAGCGCATCGACGCGTTCGAGGCCATGTGA

Alignment

ORF - retro_mluc_358 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.98 %
• Parental protein coverage: 81.38 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LPPGINVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLREVWYFGLQYVDNKGFPTWLKLDKKVSAQEV
          .P..INVRVTTMDAELEFAIQ..TTG.QLFDQVV.TIGLREVWYFGLQYVDNKGFPTWLKLDKKVSAQ.V
Retrocopy MPKPINVRVTTMDAELEFAIQRDTTGNQLFDQVVRTIGLREVWYFGLQYVDNKGFPTWLKLDKKVSAQKV

Parental  RKENPLQFKFRAKFYPEDVPEELIQDITQKLFFLQVKEGILSDEIYCPPETAVLLGSYAVQAKFGDYNKE
          RKENPLQFKFRAKFYP.DV.EELIQDITQKLFFLQVKEGILS.EIYCPPETAVLLGSYA.QAKFGDY.K.
Retrocopy RKENPLQFKFRAKFYPKDVCEELIQDITQKLFFLQVKEGILSSEIYCPPETAVLLGSYAAQAKFGDYDKD

Parental  MHKSGYLSSERLIPQRVMDQHKLTRDQWEDRIQVWHAENRGCSTNRDSAMLEYLKIAQDLEMYGINYFEI
          .HK.GYLSSERLIPQRVMDQHKLTRDQWEDR.QVWHAE.RG.....DSAMLEYLK.AQDLEMYGI.YFEI
Retrocopy LHKPGYLSSERLIPQRVMDQHKLTRDQWEDRVQVWHAEHRGML--KDSAMLEYLKTAQDLEMYGISYFEI

Parental  KNKKGTDLWLGVDALGLNIYEKEDKLTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINK
          KNK.GTDLWLGVDALGLNIYEK..KLTPKIGF.W.EIRNISFN.KKF.IK.ID.KAPDFVFYAP.LRINK
Retrocopy KNKRGTDLWLGVDALGLNIYEKDHKLTPKIGFLWGEIRNISFNKKKFFIKFIDRKAPDFVFYAPCLRINK

Parental  RILQLCMGNHELYMRRRKPDTIEVQQMKAQAREEKHQKQLERQQLETEKKRRETVEREKEQMMREKEELM
          RI..LCMGN.ELYMRRRKPDTIEVQQMKAQAREEKH..QLERQQLETE.KRRE.VEREKEQMM.EK.E..
Retrocopy RIVPLCMGNQELYMRRRKPDTIEVQQMKAQAREEKHLRQLERQQLETE-KRREAVEREKEQMMPEKAEKE

Parental  LRLQDYEQKTKKAEKELSDQIQRALQLEEERKRAQEEAE
          L..Q.........E....DQ.....QL...R.R...E.E
Retrocopy LSDQNQRALRLEEERKTVDQRKSQEQLAVARRRKEDEVE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_358 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Gorilla gorilla	ENSGGOG00000013301	1 retrocopy	retro_ggor_690,
Myotis lucifugus	ENSMLUG00000001931	3 retrocopies	retro_mluc_2037, retro_mluc_358 , retro_mluc_469,
Monodelphis domestica	ENSMODG00000007642	1 retrocopy	retro_mdom_78,