RetrogeneDB ID:

retro_mluc_469

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:AAPE02068033:223..1304(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:EZR
Ensembl ID:ENSMLUG00000001931
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_469
CTGGAGTTCTCCATCCAGCCAGACACGCCAGGAAAGCTGCTTTTTGATCAGGTGGTTAAGACAATCAGCCTTTGGGAAGT
GTGGTGCTTCGGCCTCCAGTGTGTAGATAATAAAGGATTTCCCACCTGGTTGAAACTTGATAAAAGGTGTCGGCCCAGGA
GGTCAGGAAGGAGAATCCGCTGCAGTTCAAGTTCAGGGCCAAGTTCTGCCCCGAAGATGTGTCTGAGGAGCTCATCCAGG
ACATTATGCAGAAGCTTTTCTTCGTCCACGTGAAGGAGGGCATTCTGAGCGATGAGATTTACTGCCCTCCTGAGACTGTG
GTGCTCCTTGGCTCCTACGCCATGCAGGCCAAGTTTGGAGACTATAACAAAGAAATTCACAAGTATGGGTACCTCAGCTC
CGAGCGGCTGATCCCCCAGAAAGTCATTGAGCAGCACACGCTCACCAGGGACCAGTGGGAGGACCGGATCCAGGTATGGC
ACGTGGGGCACCGCGGGATGCTCAAAGGTAGTGCCATGCTGGAGTGCCTGAAGATTGCCCAGGACCTGGAAATGTACAGA
ATCAACTATTTTGAGATAAAAAAAAATAATAACGGAACTGACTGTGGCTTGTAGTGGATGCCCTGGGACTAAATATTTAT
GAGAAAGTTGATAATTTGACCCCAAAGATTGGCTTCCCATGGAGTGAGATCAGGAACATCCATTTCAATGACAAGAACTT
TGTCATCAAGCCCATCGACAAGAAGGCGCCTGACTTCGTCTTCTATGCCCCCCGCCTGCACATCAACAAGCGGATCCTGC
AATTCCACCTGGGGAACCACGAGCTATACATGTGCTGCAAAAAGCCCGACAACATCGAGGTGCAGCAGATGAAGGCCCAG
GCCCGCAAGGAGAAGCACCAGAAGCAGCTGGAAACTAAGAAGAAGAGGCGAGAGACTGTGGAGAGAGAGAAGGAGCAGAT
GATGCGGGAGAAGGAGGAGCTGATGCTCAGGCTCCAGGACTATGAGCAGAAGACCAAGAAGGCCGAGAAAGAGCGCTCGG
ACCAGATCCAGAGGGCCCTGCAGCTGGAGGAGGAGCGGGCG

ORF - retro_mluc_469 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 73.15 %
Parental protein coverage: 75.1 %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalLEFAIQPNTTGKQLFDQVVKTIGLREVWYFGLQYVDNKGFPTWLKLDK-KVSAQEVRKENPLQFKFRAKF
LEF.IQP.T.GK.LFDQVVKTI.L.EVW.FGLQ.VDNKGFPTWLKLDK.KVSAQEVRKENPLQFKFRAKF
RetrocopyLEFSIQPDTPGKLLFDQVVKTISLWEVWCFGLQCVDNKGFPTWLKLDK<KVSAQEVRKENPLQFKFRAKF
ParentalYPEDVPEELIQDITQKLFFLQVKEGILSDEIYCPPETAVLLGSYAVQAKFGDYNKEMHKSGYLSSERLIP
.PEDV.EELIQDI.QKLFF..VKEGILSDEIYCPPET.VLLGSYA.QAKFGDYNKE.HK.GYLSSERLIP
RetrocopyCPEDVSEELIQDIMQKLFFVHVKEGILSDEIYCPPETVVLLGSYAMQAKFGDYNKEIHKYGYLSSERLIP
ParentalQRVMDQHKLTRDQWEDRIQVWHAENRGCSTNRDSAMLEYLKIAQDLEMYGINYFE-IKNKKGTD-LWLGV
Q.V..QH.LTRDQWEDRIQVWH...RG......SAMLE.LKIAQDLEMY.INYFE......GTD.LWL.V
RetrocopyQKVIEQHTLTRDQWEDRIQVWHVGHRGML--KGSAMLECLKIAQDLEMYRINYFEXXXXNNGTD<LWLVV
ParentalDALGLNIYEKEDKLTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILQLCMGNHEL
DALGLNIYEK.D.LTPKIGFPWSEIRNI.FNDK.FVIKPIDKKAPDFVFYAPRL.INKRILQ...GNHEL
RetrocopyDALGLNIYEKVDNLTPKIGFPWSEIRNIHFNDKNFVIKPIDKKAPDFVFYAPRLHINKRILQFHLGNHEL
ParentalYMRRRKPDTIEVQQMKAQAREEKHQKQLE--RQQLETEKKRRETVEREKEQMMREKEELMLRLQDYE-QK
YM...KPD.IEVQQMKAQAR.EKHQKQLE......ET.....E...REKE..M.............E...
RetrocopyYMCCKKPDNIEVQQMKAQARKEKHQKQLETKKKRRETVEREKEQMMREKEELMLRLQDYEQKTKKAEKER
ParentalTKKAEKELSDQIQRA
.......L.....RA
RetrocopySDQIQRALQLEEERA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Myotis lucifugus was not studied using RNA-Seq expression data.
Myotis lucifugus was not studied using ChIP-Seq data.
Myotis lucifugus was not studied using EST data.
Myotis lucifugus was not studied using FANTOM5 data.
retro_mluc_469 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 3 parental genes, and 5 retrocopies.

Species Parental gene accession Retrocopies number
Gorilla gorilla ENSGGOG000000133011 retrocopy
Myotis lucifugus ENSMLUG00000001931 3 retrocopies
retro_mluc_2037, retro_mluc_358, retro_mluc_469 ,
Monodelphis domestica ENSMODG000000076421 retrocopy



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