RetrogeneDB ID:

retro_mluc_88

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429877:2687528..2689064(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMLUG00000017219
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:LPCAT2
Ensembl ID:ENSMLUG00000004008
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_88
GTCGGCCCCATGTCTCAGCGCTCCTCCTCGCACGTGGACGGGTGGGAGTCCGTCGGCCGTCTCTTAAGGAGCAAGTCCTT
GTACCCGCCCGCGGTGGCCAACCCCTTCGTGCAGCGCACGCACATCAGCGCGTGGCGCTGGGCCTCCATCCTCCTCCTGG
GGACCCTGCTGGTGGCGGTGCGGGTGTCCTGCCTGGCCGTCCTCTTCGTCTTCCTCTGGCCCGTGACCATGCTGTGCACC
ATAGGCCGCTCTGCTCGCCCAGGCAAGCCCGCCAAGAGTTGGAGAAGAAAACTGGTGCAACAACCCCTCAGGTTCTTGTT
TCAGACGTGTTTCCTTGCCTCCGGCTTCCTGGTGAAAGTGAAAGGGAAAAAGGCAACCCGAAACGAGGCCCCCCTCTTGG
TGACCGCACCGCACTCCACTTTCTTCGACGCCATCGCCTGTGTGGTGGCGGGGTTGCCCTCCGTGGTCTCTGCGAGTGAA
AACGCACGGATCCCAGTGGCCGGGAAATTCCTGTTGTCAACGCAGCCGGTGCTTGTGGCTCGAGAGGACCCCAACTCCAG
GAAGACTACCCGGGATGAAATCCAGAAGCGAGTGACCTCCAAAGGGGCGTGGCCACAGATCATGATTTTCCCAGAGGGAG
TGTGTACCAATCGCTCGTGTCTGATCACTTTTAGGCTAGGGGCCTTCTCCCCAGGGGTGCCTGTGCAGCCAGTGCTGCTC
AGGTACCCGAACAGCCTGGACACGGTGACCTGGACCTGGCAGGGCTTGACAGCCTTCCAGGTGTGTATGCTGACCCTGAG
CCAGCTCTTCACCAGGGTAGAAGTGGAGTTTATGCCTGTGTACGTCCCGAGTGACCAGGAAAAAAAAGACCCCATCCTTT
TTGCCAATGCAGTGCGGGTCAACATGGCCAATGCTCTGGGGGTGCCCGTGACAGACCACACGTACGAAGACTGCAAACTA
ATGATCAGCGCAGGCAACCTTCAACTACCCATGGAAGCTGGTTTGGTGGAATTTACAAAGATCAGCCGGAAGTTGAAGTT
AGATTGGGATAGTATTCATCAGCATTTGGATGAATATGCTGCAATCGCAGTTGCCTCAAAAGGAGGGAAGATAGGAATTG
AAGAATTTGCAAGTTTTTTAAATCTCCCAATTTCAGAGCCCTTCAGACAACTGTTTGCCCTCTTTGACAGGAATAACGAC
GGCAGCATAGACTTCAGAGAGTACGTGATAGGGCTGACTGTCCTGTGCAATCCTGCCAACACGGCCGAGATTCTGCGAAT
ATCCTTTAAGCTTTTTGATCTTGATGAGGATGGCTTCATAACACAACCGGAGTTGGCTGCTATACTTCAGGCAGCTTTTG
GGGTGCCTGACCTTGATGTTTCCAGTCTCTTTCAGGGAATAGCTAGACAGAACTCAGAACACATTTCATACAAGGACTTT
ATGAAATTTGCTTTGAAGCACCCAGAATATGCCATTCTATTTAATTCATATTTAGAACTCCAGGCAGCCTATATATACAC
ATCACCACAAGAACAA

ORF - retro_mluc_88 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 62.58 %
Parental protein coverage: 89.52 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalRQASFFPPPVRNPFVQQTRLGAGRRIQTFFLGIVLLPVRALLLGLVLLLAWPFAAISTVCCPDKPTHPIT
R..S..PP.V.NPFVQ.T...A.R......LG..L..VR...L.......WP.....T......P..P..
RetrocopyRSKSLYPPAVANPFVQRTHISAWRWASILLLGTLLVAVRVSCLAVLFVFLWPVTMLCTIGRSARPGKPAK
ParentalGWRRKITHPVLKFLGRAMFFSMGFSVTVKGKIASPVEAPIFVVAPHSTFFDGIACVAAGLPSMVSRNENV
.WRRK.....L.FL....F...GF.V.VKGK.A...EAP..V.APHSTFFD.IACV.AGLPS.VS..EN.
RetrocopySWRRKLVQQPLRFLFQTCFLASGFLVKVKGKKATRNEAPLLVTAPHSTFFDAIACVVAGLPSVVSASENA
ParentalQVPLIGRLLRALQPVLVSRVDPDSRKNTINEIIRRATSGGEWPQILVFPEGTCTNRSCLITFKPGAFIPA
..P..G..L...QPVLV.R.DP.SRK.T..EI..R.TS.G.WPQI..FPEG.CTNRSCLITF..GAF.P.
RetrocopyRIPVAGKFLLSTQPVLVAREDPNSRKTTRDEIQKRVTSKGAWPQIMIFPEGVCTNRSCLITFRLGAFSPG
ParentalVPVQPILLRYPNKLDTVTWTWQGYTFFQLCVLTFCQPYTRVEVEFMPVQAPNDEEKRDPVLFAGRVRNLM
VPVQP.LLRYPN.LDTVTWTWQG.T.FQ.C.LT..Q..TRVEVEFMPV..P.D.EK.DP.LFA..VR..M
RetrocopyVPVQPVLLRYPNSLDTVTWTWQGLTAFQVCMLTLSQLFTRVEVEFMPVYVPSDQEKKDPILFANAVRVNM
ParentalAEALEIPVTDHTYEDCRLMISAGQLTLPMEAGLVEFTKISRKLKLDWDGIRKHLDEYATIASSSKGGRIG
A.AL..PVTDHTYEDC.LMISAG.L.LPMEAGLVEFTKISRKLKLDWD.I..HLDEYA.IA..SKGG.IG
RetrocopyANALGVPVTDHTYEDCKLMISAGNLQLPMEAGLVEFTKISRKLKLDWDSIHQHLDEYAAIAVASKGGKIG
ParentalIEEFAEYLKLPVSDVLRQLFALFDRNHDGSIDFREYVIGLAVLCNPANTEEIIQVAFKLFDLDEDGYISE
IEEFA..L.LP.S...RQLFALFDRN.DGSIDFREYVIGL.VLCNPANT.EI....FKLFDLDEDG.I..
RetrocopyIEEFASFLNLPISEPFRQLFALFDRNNDGSIDFREYVIGLTVLCNPANTAEILRISFKLFDLDEDGFITQ
ParentalEEFSTILQASLGVPDLDGSGLFKEIAQGDS--VSYEEFKSFALKHPEYARIFTTYLELQAGHVFSLPEE
.E...ILQA..GVPDLD.S.LF..IA...S...SY..F..FALKHPEYA..F..YLELQA......P.E
RetrocopyPELAAILQAAFGVPDLDVSSLFQGIARQNSEHISYKDFMKFALKHPEYAILFNSYLELQAAYIYTSPQE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Myotis lucifugus was not studied using ChIP-Seq data.

EST - click to see more details

Myotis lucifugus was not studied using EST data.

TSS - click to see more details

Myotis lucifugus was not studied using FANTOM5 data.

Lab - click to see more details

retro_mluc_88 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 20 parental genes, and 21 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000192721 retrocopy
retro_btau_64,
Callithrix jacchus ENSCJAG000000129021 retrocopy
retro_cjac_2945,
Dasypus novemcinctus ENSDNOG000000068591 retrocopy
retro_dnov_1735,
Dipodomys ordii ENSDORG000000131931 retrocopy
retro_dord_399,
Equus caballus ENSECAG000000096491 retrocopy
retro_ecab_865,
Erinaceus europaeus ENSEEUG000000142771 retrocopy
retro_eeur_109,
Homo sapiens ENSG000000872531 retrocopy
retro_hsap_185,
Gorilla gorilla ENSGGOG000000051441 retrocopy
retro_ggor_266,
Loxodonta africana ENSLAFG000000039651 retrocopy
retro_lafr_66,
Myotis lucifugus ENSMLUG00000004008 1 retrocopy
retro_mluc_88 ,
Macaca mulatta ENSMMUG000000044781 retrocopy
retro_mmul_392,
Mus musculus ENSMUSG000000331921 retrocopy
retro_mmus_270,
Nomascus leucogenys ENSNLEG000000012581 retrocopy
retro_nleu_994,
Pongo abelii ENSPPYG000000073581 retrocopy
retro_pabe_445,
Pan troglodytes ENSPTRG000000081242 retrocopies
retro_ptro_171, retro_ptro_2928,
Pteropus vampyrus ENSPVAG000000078011 retrocopy
retro_pvam_173,
Rattus norvegicus ENSRNOG000000166431 retrocopy
retro_rnor_309,
Sorex araneus ENSSARG000000119141 retrocopy
retro_sara_88,
Sarcophilus harrisii ENSSHAG000000123831 retrocopy
retro_shar_116,
Tursiops truncatus ENSTTRG000000011821 retrocopy
retro_ttru_188,


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