RetrogeneDB ID: | retro_rnor_309 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 14:3359474..3361028(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000048507 | |
Aliases: | Lpcat2b, Aytl1b, Lpcat2bp, RGD1310837 | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Lpcat2 | ||
Ensembl ID: | ENSRNOG00000016643 | ||
Aliases: | Lpcat2, LPCAT-2, RGD1563994 | ||
Description: | lysophosphatidylcholine acyltransferase 2 [Source:RefSeq peptide;Acc:NP_001258273] |
Percent Identity: | 62.63 % |
Parental protein coverage: | 89.15 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SFFPPPVPNPFVQQTRISAARRLQMILLGIILLPVRALLVGLVLLLAWPFAVISTVCCPKKLTHPISDWR |
S..PP.V.NPF...T..SA......I.LG..L.PVR........LL.WP.A..ST...P...T.P...WR | |
Retrocopy | SLYPPAVTNPFTHHTQLSAWQLACSIFLGTVLVPVRVSCIVFLFLLLWPVALLSTINLPIQPTEPVKSWR |
Parental | RKITQPALKFLGRAMFFSMGFRVTVKGKVASPLEAPIFVVAPHSTFFDGIACVVAGLPSLVSRNENAQTP |
.....P...FL.R..FF..GF...VKGK.A...EAPIFVVAPHSTFFD.IA..VAGLPS.VS.......P | |
Retrocopy | KHLIKPVFIFLLRLAFFCAGFLIKVKGKKATREEAPIFVVAPHSTFFDAIAVIVAGLPSVVSDTQHVRIP |
Parental | LVGRLLRALQPVLVSRVDPDSRKNTINEIKKRAMSGGEWPQILVFPEGTCTNRSCLITFKPGAFIPGVPV |
LVG......QPVLV.R.DP.SRK.T.NEI..R..S...WPQIL.FPEG.CTNRSCL.TFK.GAF.PGVPV | |
Retrocopy | LVGQCILLTQPVLVRREDPNSRKTTRNEILSRVKSKMKWPQILIFPEGLCTNRSCLVTFKLGAFSPGVPV |
Parental | QPVLLRYPNKLDTVTWTWQGYTFIQLCVLTFCQLFTKVEVEFMPVQAPSEEERNDPVLFASRVRNLMAEA |
QPVLLRYPN.LDTVTWTW.G....Q.C.LT..Q.FT..EVEFMPV..P.E.E..DP.LFA..VR..MA.A | |
Retrocopy | QPVLLRYPNTLDTVTWTWHGFSGFQVCMLTLSQPFTRMEVEFMPVYIPNEDEKKDPILFANTVRINMANA |
Parental | LEIPVTDHTYEDCRLMISAGQLTLPMEAGLVEFTKISRKLKLDWDGIRKHLDEYASIASSAKGGRIGIEE |
L..PVTDH..EDC.LMISAG.L.LPMEAGLVEFTKIS.KLKLDWD.I..HLD.YAS.A.S.KGG.IGIEE | |
Retrocopy | LKLPVTDHSFEDCKLMISAGALRLPMEAGLVEFTKISQKLKLDWDNIHTHLDKYASVAVSSKGGKIGIEE |
Parental | FAEYLKLPVSDVLRQLFALFDRNNDGSIDFREYVIGLAVLCNPANTEDIIQVAFKLFDVDEDGYITEEEF |
F..YLKLP.S..LRQLF.LFDRN.DG.IDFREYVIGL.VLCNPANTE.I.Q..FKLFD.DEDGYITE.E. | |
Retrocopy | FSRYLKLPISEPLRQLFSLFDRNQDGTIDFREYVIGLTVLCNPANTEKILQMSFKLFDLDEDGYITEQEL |
Parental | CTILQASLGVPDLNVSGLFREIAQGDS--VSYEEFKSFALKHPEYAKIFTTYLDLQTCHVFSLPEDV |
.T.L.A..GVPDL.VS.LF...A..DS..VSY..F..FALKHP.YAK.F..Y.DLQ.....SLP..V | |
Retrocopy | TTMLRAAFGVPDLDVSTLFQQMAGKDSAQVSYRTFRRFALKHPAYAKLFHSYIDLQAAYIYSLPGEV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 1 .44 RPM | 7 .55 RPM |
SRP017611_kidney | 0 .00 RPM | 4 .33 RPM |
SRP017611_liver | 0 .00 RPM | 0 .54 RPM |
Species | RetrogeneDB ID |
---|---|
Bos taurus | retro_btau_64 |
Equus caballus | retro_ecab_865 |
Mus musculus | retro_mmus_270 |