RetrogeneDB ID: retro_mluc_910

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429782:13209037..13209439(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000022771
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: PIGH
• Ensembl ID: ENSMLUG00000004467
• Aliases: None
• Description: None

Sequence

>retro_mluc_910
CTCTTCACCCTCTGCCAGAACAGCGTGATTCTCTCCGCTGCCATAGTCATCACCCTCAGAGGCCTGCTTGGTTACCTCCA
TTTTGTGAAGCTTGATCAGAGGACTCTGTTAATCACTGATTCCCTTGGCATCCAGATGACTTCATCCTATGCCTCTGGCA
AAGAAAGCACCACCCTCATTGGGGTGGGCAAGGTGAAGGATGTTATCATTAATGAGGCTATTTACATGCAGAAGATGACT
GCCTACCTCTGCATTTTATTGAATGATCCAGTGGAACCAAATGGGGTATCCCAAGAAGTACCTGTCTTCCAGAGTGCCAA
GCCCCAACTGAACTGCTTGATTGACGTGTACAGGAGCTGCCAGGAGACCCTGGCACACCAGAAAGCCACATCCACAAGCC
CA

Alignment

ORF - retro_mluc_910 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.84 %
• Parental protein coverage: 71.28 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LFTLCENSMILSAAIFITLIGLLGYLHFVKIDQETLLIIDSLGIQMTSSYASGKESTTFIEMGKVKDVII
          LFTLC.NS.ILSAAI.ITL.GLLGYLHFVK.DQ.TLLI.DSLGIQMTSSYASGKESTT.I..GKVKDVII
Retrocopy LFTLCQNSVILSAAIVITLRGLLGYLHFVKLDQRTLLITDSLGIQMTSSYASGKESTTLIGVGKVKDVII

Parental  NEAIYMQKVIYYLCILLNDPMEPNGISQVVPVFPSAKPRLDCLIEVYRSCQEILAPGKATSTSP
          NEAIYMQK...YLCILLNDP.EPNG.SQ.VPVF.SAKP.L.CLI.VYRSCQE.LA..KATSTSP
Retrocopy NEAIYMQKMTAYLCILLNDPVEPNGVSQEVPVFQSAKPQLNCLIDVYRSCQETLAHQKATSTSP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_910 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000003328	1 retrocopy	retro_cpor_815,
Echinops telfairi	ENSETEG00000008623	1 retrocopy	retro_etel_844,
Homo sapiens	ENSG00000100564	1 retrocopy	retro_hsap_1506,
Gorilla gorilla	ENSGGOG00000001507	1 retrocopy	retro_ggor_1155,
Macropus eugenii	ENSMEUG00000011325	1 retrocopy	retro_meug_2130,
Myotis lucifugus	ENSMLUG00000004467	1 retrocopy	retro_mluc_910 ,
Nomascus leucogenys	ENSNLEG00000000739	1 retrocopy	retro_nleu_1747,
Pongo abelii	ENSPPYG00000005925	1 retrocopy	retro_pabe_1255,
Pan troglodytes	ENSPTRG00000006466	1 retrocopy	retro_ptro_1020,
Tarsius syrichta	ENSTSYG00000008465	1 retrocopy	retro_tsyr_1926,