RetrogeneDB ID: retro_mluc_960

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429785:12458001..12458276(-)
• Located in intron of: ENSMLUG00000014602

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MEAF6
• Ensembl ID: ENSMLUG00000017128
• Aliases: None
• Description: None

Sequence

>retro_mluc_960
GCCGTAAGTACGTTGGCAGGAGTTCAGGACCAGCTGATTGAAGAGAGGGGACCAAGAAGTGGGGTGGAAAATGATACTTC
TCCAGACTTCCACAGTCAGGAAAATGAGCCCAACCAGGAGGAGCCTGAGGATCCGGATGGGTCTGTGCAGAGAGTGAAAC
CTGAGAAGGCTGCTTCTGCTTCTGCAGGGAGGCCTCACAGCAGCCATAAAAACCAAAGACTAAAAACCAGCTCAGGATTG
ATCTGAAGTTAAACAAAAAACCTCGAGCTGACTAT

Alignment

ORF - retro_mluc_960 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.42 %
• Parental protein coverage: 75.41 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  AVSALAGVQDQLIEKREPGSGTESDTSPDFHNQENEPTQEDPEDLDGSVQGVKPQKAASTSSGSHHSSHK
          AVS.LAGVQDQLIE.R.P.SG.E.DTSPDFH.QENEP.QE.PED.DGSVQ.VKP.KAAS.S.G..HSSHK
Retrocopy AVSTLAGVQDQLIEERGPRSGVENDTSPDFHSQENEPNQEEPEDPDGSVQRVKPEKAASASAGRPHSSHK

Parental  -KRKNKNRHRIDLKLNKKPRADY
          .K.K.KN..RIDLKLNKKPRADY
Retrocopy <KPKTKNQLRIDLKLNKKPRADY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_960 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000001927	1 retrocopy	retro_cjac_2767,
Cavia porcellus	ENSCPOG00000025988	1 retrocopy	retro_cpor_1252,
Erinaceus europaeus	ENSEEUG00000013971	3 retrocopies	retro_eeur_362, retro_eeur_469, retro_eeur_654,
Macropus eugenii	ENSMEUG00000003403	3 retrocopies	retro_meug_1279, retro_meug_584, retro_meug_727,
Myotis lucifugus	ENSMLUG00000017128	2 retrocopies	retro_mluc_436, retro_mluc_960 ,
Otolemur garnettii	ENSOGAG00000006773	1 retrocopy	retro_ogar_2339,
Vicugna pacos	ENSVPAG00000001916	1 retrocopy	retro_vpac_566,