RetrogeneDB ID: | retro_vpac_566 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_4718:82659..83100(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MEAF6 | ||
Ensembl ID: | ENSVPAG00000001916 | ||
Aliases: | None | ||
Description: | MYST/Esa1-associated factor 6 [Source:HGNC Symbol;Acc:25674] |
Percent Identity: | 99.32 % |
Parental protein coverage: | 85.96 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ETLANLERQIYAFEGSYLEDTQMYGNIIRGWDRYLTNQKNSNSKNDRRNRKFKEAERLFSKSSVTSAAAV |
ETLANLERQIYAFEGSYLEDTQMYGNIIRGWDRYLTNQKNSNSKNDRRNRKFKEAERLFSKSSVTSAAAV | |
Retrocopy | ETLANLERQIYAFEGSYLEDTQMYGNIIRGWDRYLTNQKNSNSKNDRRNRKFKEAERLFSKSSVTSAAAV |
Parental | SALAGVQDQLIEKREPGSGTESDTSPDFHNQENEPSQEDPEDLDGSVQGVKPQKAASSTSSGSHHSSHKK |
SALAGVQDQLIEKREPGSGTESDTSPDFHNQENEPSQEDPEDLDGSVQGVKPQKAA.STSSGSHHSSHKK | |
Retrocopy | SALAGVQDQLIEKREPGSGTESDTSPDFHNQENEPSQEDPEDLDGSVQGVKPQKAAASTSSGSHHSSHKK |
Parental | RKNKNRH |
RKNKNRH | |
Retrocopy | RKNKNRH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000001927 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000025988 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000013971 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000003403 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000017128 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000006773 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000001916 | 1 retrocopy |
retro_vpac_566 ,
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