RetrogeneDB ID: | retro_mmul_907 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 12:32769945..32770300(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.18639 | ||
Ensembl ID: | ENSMMUG00000012228 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2 variant 1 [Source:RefSeq peptide;Acc:NP_001192013] |
Percent Identity: | 81.82 % |
Parental protein coverage: | 80.95 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | ATTGSGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECG |
AT.G.GVKVP.NF.LLEELE.GQKGVGDGT.SWGLED.EDM.LTRWT...IGPPRTI.EN.IYSLKI.CG | |
Retrocopy | ATMGLGVKVPQNFQLLEELEQGQKGVGDGTGSWGLEDSEDMILTRWTETVIGPPRTIDEN*IYSLKIKCG |
Parental | PKYPEAPP-FVRFVTKINMNGVNSSNGVVD-PRAISVLAKWQNSYSIKVVL |
PKYPEAP..F.RF.TKINMNG..SSNGVVD.PRA.SVLAKWQNSYSIKVVL | |
Retrocopy | PKYPEAPT<FERFLTKINMNGIKSSNGVVD<PRAVSVLAKWQNSYSIKVVL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 90 .20 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 97 .89 RPM |
SRP007412_cerebellum | 0 .00 RPM | 75 .94 RPM |
SRP007412_heart | 0 .00 RPM | 58 .89 RPM |
SRP007412_kidney | 0 .00 RPM | 66 .67 RPM |
SRP007412_liver | 0 .00 RPM | 34 .40 RPM |
SRP007412_testis | 0 .00 RPM | 171 .54 RPM |