RetrogeneDB ID: | retro_mmul_1182 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 15:45906479..45907015(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.3888 | ||
Ensembl ID: | ENSMMUG00000006899 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.78 % |
Parental protein coverage: | 67.56 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | GAAGATSLCFVYPLDFARTRLAADVGKSGTEREFRGLGDCLVKITKSDGIRGLYQGFSVSVQGIIIYRAA |
G.....S...VYPLDF.R..LAADV.KSGTE.EFRGLGDCLVKI.KSDGIRGLYQGFSVSVQGIIIY.AA | |
Retrocopy | GNLASGSVAVVYPLDFTRICLAADVEKSGTESEFRGLGDCLVKIPKSDGIRGLYQGFSVSVQGIIIYQAA |
Parental | -YFGVYDTAKGMLPDPKNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWR |
...GVYDTAKGMLPD.KNTHI.VSWMIAQTVTA.AGVVSYPFDTVRR.MM.QSGRKGAD.MYTGT.DCWR | |
Retrocopy | <LLGVYDTAKGMLPDLKNTHILVSWMIAQTVTAMAGVVSYPFDTVRRQMMTQSGRKGADVMYTGTADCWR |
Parental | KIFRDEGGKAFFKGAWSNVLRGMG--GAFVLVLYDELKKV |
KIFRDE..KAFFKGAWSNVLRGMG....FVLVLYDELKKV | |
Retrocopy | KIFRDEAAKAFFKGAWSNVLRGMGVGAGFVLVLYDELKKV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 123 .48 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 458 .61 RPM |
SRP007412_cerebellum | 0 .00 RPM | 122 .89 RPM |
SRP007412_heart | 0 .06 RPM | 82 .20 RPM |
SRP007412_kidney | 0 .00 RPM | 205 .63 RPM |
SRP007412_liver | 0 .00 RPM | 138 .86 RPM |
SRP007412_testis | 0 .94 RPM | 23 .97 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4147 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000005609 | 1 retrocopy | |
Homo sapiens | ENSG00000169100 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000023004 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000001584 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000006136 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000006899 | 1 retrocopy |
retro_mmul_1182 ,
|
Macaca mulatta | ENSMMUG00000022663 | 6 retrocopies | |
Nomascus leucogenys | ENSNLEG00000000389 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000000963 | 2 retrocopies |