RetrogeneDB ID: | retro_hsap_2460 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 20:21723091..21723715(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000233015 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLC25A6 | ||
Ensembl ID: | ENSG00000169100 | ||
Aliases: | None | ||
Description: | solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 [Source:HGNC Symbol;Acc:10992] |
Percent Identity: | 59.36 % |
Parental protein coverage: | 70.13 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 8 |
Parental | SKTAVAPIERVKLLL-QVQHASK-QIAADKQYK-GIVDCIVRIPKEQGVLSFWRG-NLANVIRYF-PTQA |
S..AVA.I..VKLLL.Q.QHAS..QIAA.KQ......DC...I.KE.G...F..G.NLA..I.YF.P.QA | |
Retrocopy | SQMAVAQIQQVKLLLLQGQHASS<QIAAHKQHEVWWMDCVLCISKEHGAV-FLEG>NLASAIHYF<PMQA |
Parental | LNFAFKDKYKQIFL-GGVDKHTQFWRYFAGNLASGGAAGATSLCFVYPLD-FARTRLAADVG-KSGTERE |
LNFAFKDKYKQ.FL.GG.DK..QFWR.FAG..A.GG.AG.TSLCF.YPLD.F.RT......G.K.GT..E | |
Retrocopy | LNFAFKDKYKQFFL<GGADKRMQFWRCFAGHPALGGLAGTTSLCFMYPLD<FPRTSWQQTLG<KLGTVHE |
Parental | FRGLGDCLVKITKSDGIR-GLYQGFSVS-VQGIIIYRAAYFGVYDTAKGMLPDPKNTHIVVSWMIAQTVT |
F..LG...V.ITKS.G.R.GLYQGFS.S..Q.IIIY.AA.F...DTA.GMLP.PKN.HI..S...A.T.. | |
Retrocopy | FKDLGAWPVRITKSNGPR<GLYQGFSIS<MQDIIIYPAASFC**DTAEGMLPSPKNMHILAS*VTAKTMR |
Parental | AVAGVVSYP |
A.A...SYP | |
Retrocopy | AMANMISYP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 314 .07 RPM |
bodymap2_adrenal | 0 .00 RPM | 338 .52 RPM |
bodymap2_brain | 0 .00 RPM | 77 .31 RPM |
bodymap2_breast | 0 .00 RPM | 243 .60 RPM |
bodymap2_colon | 0 .00 RPM | 328 .05 RPM |
bodymap2_heart | 0 .00 RPM | 54 .59 RPM |
bodymap2_kidney | 0 .00 RPM | 175 .14 RPM |
bodymap2_liver | 0 .00 RPM | 42 .12 RPM |
bodymap2_lung | 0 .00 RPM | 179 .15 RPM |
bodymap2_lymph_node | 0 .00 RPM | 193 .70 RPM |
bodymap2_ovary | 0 .00 RPM | 334 .67 RPM |
bodymap2_prostate | 0 .00 RPM | 261 .14 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 72 .51 RPM |
bodymap2_testis | 0 .02 RPM | 138 .91 RPM |
bodymap2_thyroid | 0 .00 RPM | 240 .40 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 294 .37 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000005609 | 1 retrocopy | |
Homo sapiens | ENSG00000005022 | 7 retrocopies | |
Homo sapiens | ENSG00000169100 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000023004 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000001584 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000006136 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000006899 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000389 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000000963 | 2 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .02 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |