RetrogeneDB ID:

retro_ggor_2785

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:9:31820934..31821615(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:SLC25A6
Ensembl ID:ENSGGOG00000023004
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_2785
CAGGGCGTGCTGTCCTTCTGGAGGGGCAACCTTGCCAACGTCATCCGCTACTCCCCCACGCAAGCCCTCAATTTCGCCTT
CAAGGATAAGTACAAGCAGATCTTCCTGGCGGGCGTGGACAAGCACACGCAGTTCTGCAGGTACTTTGCGGGCAACCTGG
CCTCTGGCAGCACGGCCATCGTGTATCCCCTGGATTTCACCAGAACCCGCCTGGCAGCCGACGTGGGAAAGTCAGGCACG
GAGCGCGAGTTCCGAGGCCTGGGAGACGGCCTAGTGAAGATCAGCAAGTCTGACGGCATCCGGGGCCTTTACCAGGGCTT
CAGCGTCTCCGTGCAGGCCATCATCACCTACCAGGCAGCCTACTTCAGGGTGTACGATACGGCCAAGGGCATGTTCCCCG
ACCCCAAGCACACACACATCCTGGTGAGCTGGATGATCGCGCAGACCGTGACGGCCGTGGCTGGCGTGGTCTCCTACCCC
TTCGACACAGTGCGGCGGCGGACGATGATGCAGTCCCGGCGTAAAGGAGCTGACATCATGTACACGGGCACCGTCGACTG
TTGGAGGAAGATCTTCAGAGACGAGCGGGGCGAGGCCTTTTTCAAGGGCGTGTGGTCCAACGCCCTCAGAGGCATGGGGG
TGGGGGCGGGCTTCGTGCTGGTCCTGTACGACGAGCTGAAG

ORF - retro_ggor_2785 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 85.84 %
Parental protein coverage: 71.52 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFAGNLASGGAAGATSLCFVYPL
QGVLSFWRGNLANVIRY.PTQALNFAFKDKYKQIFL.GVDKHTQF.RYFAGNL....A.G.T....VYPL
RetrocopyQGVLSFWRGNLANVIRYSPTQALNFAFKDKYKQIFLAGVDKHTQFCRYFAGNL----ASGSTAI--VYPL
ParentalDFARTRLAADVGKSGTEREFRGLGDCLVKITKSDGIRGLYQGFSVSVQGIIIYRAAYFGVYDTAKGMLPD
DF.RTRLAADVGKSGTEREFRGLGD.LVKI.KSDGIRGLYQGFSVSVQ.II.Y.AAYF.VYDTAKGM.PD
RetrocopyDFTRTRLAADVGKSGTEREFRGLGDGLVKISKSDGIRGLYQGFSVSVQAIITYQAAYFRVYDTAKGMFPD
ParentalPKNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIFRDEGGKAFFKGA
PK.THI.VSWMIAQTVTAVAGVVSYPFDTVRRR.MMQS.RKGADIMYTGTVDCWRKIFRDE.G.AFFKG.
RetrocopyPKHTHILVSWMIAQTVTAVAGVVSYPFDTVRRRTMMQSRRKGADIMYTGTVDCWRKIFRDERGEAFFKGV
ParentalWSNVLRGM--GGAFVLVLYDELK
WSN.LRGM..G..FVLVLYDELK
RetrocopyWSNALRGMGVGAGFVLVLYDELK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 223 .08 RPM
SRP007412_cerebellum 0 .00 RPM 203 .69 RPM
SRP007412_heart 0 .03 RPM 158 .54 RPM
SRP007412_kidney 0 .04 RPM 279 .56 RPM
SRP007412_liver 0 .03 RPM 73 .28 RPM
SRP007412_testis 0 .00 RPM 87 .54 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_2785 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_2785 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 9 parental genes, and 23 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000056091 retrocopy
Homo sapiens ENSG000001691005 retrocopies
Gorilla gorilla ENSGGOG000000142798 retrocopies
Gorilla gorilla ENSGGOG00000023004 2 retrocopies
retro_ggor_239, retro_ggor_2785 ,
Loxodonta africana ENSLAFG000000015841 retrocopy
Microcebus murinus ENSMICG000000061362 retrocopies
Macaca mulatta ENSMMUG000000068991 retrocopy
Nomascus leucogenys ENSNLEG000000003891 retrocopy
Otolemur garnettii ENSOGAG000000009632 retrocopies



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