RetrogeneDB ID: | retro_ggor_2785 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 9:31820934..31821615(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLC25A6 | ||
Ensembl ID: | ENSGGOG00000023004 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.84 % |
Parental protein coverage: | 71.52 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | QGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFAGNLASGGAAGATSLCFVYPL |
QGVLSFWRGNLANVIRY.PTQALNFAFKDKYKQIFL.GVDKHTQF.RYFAGNL....A.G.T....VYPL | |
Retrocopy | QGVLSFWRGNLANVIRYSPTQALNFAFKDKYKQIFLAGVDKHTQFCRYFAGNL----ASGSTAI--VYPL |
Parental | DFARTRLAADVGKSGTEREFRGLGDCLVKITKSDGIRGLYQGFSVSVQGIIIYRAAYFGVYDTAKGMLPD |
DF.RTRLAADVGKSGTEREFRGLGD.LVKI.KSDGIRGLYQGFSVSVQ.II.Y.AAYF.VYDTAKGM.PD | |
Retrocopy | DFTRTRLAADVGKSGTEREFRGLGDGLVKISKSDGIRGLYQGFSVSVQAIITYQAAYFRVYDTAKGMFPD |
Parental | PKNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIFRDEGGKAFFKGA |
PK.THI.VSWMIAQTVTAVAGVVSYPFDTVRRR.MMQS.RKGADIMYTGTVDCWRKIFRDE.G.AFFKG. | |
Retrocopy | PKHTHILVSWMIAQTVTAVAGVVSYPFDTVRRRTMMQSRRKGADIMYTGTVDCWRKIFRDERGEAFFKGV |
Parental | WSNVLRGM--GGAFVLVLYDELK |
WSN.LRGM..G..FVLVLYDELK | |
Retrocopy | WSNALRGMGVGAGFVLVLYDELK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 223 .08 RPM |
SRP007412_cerebellum | 0 .00 RPM | 203 .69 RPM |
SRP007412_heart | 0 .03 RPM | 158 .54 RPM |
SRP007412_kidney | 0 .04 RPM | 279 .56 RPM |
SRP007412_liver | 0 .03 RPM | 73 .28 RPM |
SRP007412_testis | 0 .00 RPM | 87 .54 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000005609 | 1 retrocopy | |
Homo sapiens | ENSG00000169100 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000014279 | 8 retrocopies | |
Gorilla gorilla | ENSGGOG00000023004 | 2 retrocopies |
retro_ggor_239, retro_ggor_2785 ,
|
Loxodonta africana | ENSLAFG00000001584 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000006136 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000006899 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000389 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000000963 | 2 retrocopies |